Lineage for Protein: Archaeal homoheptameric Sm protein

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 296506Fold b.38: Sm-like fold [50181] (2 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 296507Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (3 families) (S)
  5. 296508Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183] (7 proteins)
    forms homo and heteroheptameric ring structures
  6. 296509Protein Archaeal homoheptameric Sm protein [63758] (5 species)

Species:

  1. 296510Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId:2234] [63761] (2 PDB entries)
    1. Domains for 1i4k:
      1. 296511Domain d1i4k1_: 1i4k 1: [61690]
      2. 296512Domain d1i4k2_: 1i4k 2: [61691]
        complexed with cit
      3. 296513Domain d1i4ka_: 1i4k A: [61692]
      4. 296514Domain d1i4kb_: 1i4k B: [61693]
      5. 296515Domain d1i4kc_: 1i4k C: [61694]
      6. 296516Domain d1i4kd_: 1i4k D: [61695]
      7. 296517Domain d1i4ke_: 1i4k E: [61696]
      8. 296518Domain d1i4kf_: 1i4k F: [61697]
      9. 296519Domain d1i4kg_: 1i4k G: [61698]
      10. 296520Domain d1i4kh_: 1i4k H: [61699]
      11. 296521Domain d1i4ki_: 1i4k I: [61700]
      12. 296522Domain d1i4kj_: 1i4k J: [61701]
      13. 296523Domain d1i4kk_: 1i4k K: [61702]
      14. 296524Domain d1i4kl_: 1i4k L: [61703]
      15. 296525Domain d1i4km_: 1i4k M: [61704]
      16. 296526Domain d1i4kn_: 1i4k N: [61705]
      17. 296527Domain d1i4ko_: 1i4k O: [61706]
      18. 296528Domain d1i4kp_: 1i4k P: [61707]
      19. 296529Domain d1i4kq_: 1i4k Q: [61708]
      20. 296530Domain d1i4kr_: 1i4k R: [61709]
      21. 296531Domain d1i4ks_: 1i4k S: [61710]
      22. 296532Domain d1i4kt_: 1i4k T: [61711]
      23. 296533Domain d1i4ku_: 1i4k U: [61712]
      24. 296534Domain d1i4kv_: 1i4k V: [61713]
      25. 296535Domain d1i4kw_: 1i4k W: [61714]
      26. 296536Domain d1i4kx_: 1i4k X: [61715]
      27. 296537Domain d1i4ky_: 1i4k Y: [61716]
      28. 296538Domain d1i4kz_: 1i4k Z: [61717]
    2. Domains for 1i5l:
      1. 296539Domain d1i5la_: 1i5l A: [61791]
      2. 296540Domain d1i5lb_: 1i5l B: [61792]
      3. 296541Domain d1i5lc_: 1i5l C: [61793]
      4. 296542Domain d1i5ld_: 1i5l D: [61794]
      5. 296543Domain d1i5le_: 1i5l E: [61795]
      6. 296544Domain d1i5lf_: 1i5l F: [61796]
      7. 296545Domain d1i5lg_: 1i5l G: [61797]
      8. 296546Domain d1i5lh_: 1i5l H: [61798]
      9. 296547Domain d1i5li_: 1i5l I: [61799]
      10. 296548Domain d1i5lj_: 1i5l J: [61800]
      11. 296549Domain d1i5lk_: 1i5l K: [61801]
      12. 296550Domain d1i5ll_: 1i5l L: [61802]
      13. 296551Domain d1i5lm_: 1i5l M: [61803]
      14. 296552Domain d1i5ln_: 1i5l N: [61804]
        complexed with short poly-U RNA
        complexed with uri
  2. 296553Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId:2234] [74938] (1 PDB entry)
  3. 296555Archaeon Methanobacterium thermoautotrophicum [TaxId:145262] [63759] (5 PDB entries)
    MTH649, smap1
    1. Domains for 1i81:
      1. 296563Domain d1i81a_: 1i81 A: [61930]
      2. 296564Domain d1i81b_: 1i81 B: [61931]
      3. 296565Domain d1i81c_: 1i81 C: [61932]
      4. 296566Domain d1i81d_: 1i81 D: [61933]
      5. 296567Domain d1i81e_: 1i81 E: [61934]
      6. 296568Domain d1i81f_: 1i81 F: [61935]
      7. 296569Domain d1i81g_: 1i81 G: [61936]
    2. Domains for 1jbm:
      1. 296570Domain d1jbma_: 1jbm A: [84143]
      2. 296571Domain d1jbmb_: 1jbm B: [84144]
      3. 296572Domain d1jbmc_: 1jbm C: [84145]
      4. 296573Domain d1jbmd_: 1jbm D: [84146]
      5. 296574Domain d1jbme_: 1jbm E: [84147]
      6. 296575Domain d1jbmf_: 1jbm F: [84148]
      7. 296576Domain d1jbmg_: 1jbm G: [84149]
        structural genomics
        complexed with acy, edo
    3. Domains for 1jri:
      1. 296591Domain d1jria_: 1jri A: [67121]
      2. 296592Domain d1jrib_: 1jri B: [67122]
      3. 296593Domain d1jric_: 1jri C: [67123]
      4. 296594Domain d1jrid_: 1jri D: [67124]
      5. 296595Domain d1jrie_: 1jri E: [67125]
      6. 296596Domain d1jrif_: 1jri F: [67126]
      7. 296597Domain d1jrig_: 1jri G: [67127]
      8. 296598Domain d1jrih_: 1jri H: [67128]
      9. 296599Domain d1jrii_: 1jri I: [67129]
      10. 296600Domain d1jrij_: 1jri J: [67130]
      11. 296601Domain d1jrik_: 1jri K: [67131]
      12. 296602Domain d1jril_: 1jri L: [67132]
      13. 296603Domain d1jrim_: 1jri M: [67133]
      14. 296604Domain d1jrin_: 1jri N: [67134]
        complexed with cl, edo
    4. Domains for 1loj:
      1. 296577Domain d1loja_: 1loj A: [84650]
      2. 296578Domain d1lojb_: 1loj B: [84651]
      3. 296579Domain d1lojc_: 1loj C: [84652]
      4. 296580Domain d1lojd_: 1loj D: [84653]
      5. 296581Domain d1loje_: 1loj E: [84654]
      6. 296582Domain d1lojf_: 1loj F: [84655]
      7. 296583Domain d1lojg_: 1loj G: [84656]
      8. 296584Domain d1lojh_: 1loj H: [84657]
      9. 296585Domain d1loji_: 1loj I: [84658]
      10. 296586Domain d1lojj_: 1loj J: [84659]
      11. 296587Domain d1lojk_: 1loj K: [84660]
      12. 296588Domain d1lojl_: 1loj L: [84661]
      13. 296589Domain d1lojm_: 1loj M: [84662]
      14. 296590Domain d1lojn_: 1loj N: [84663]
        complexed with mpd, u, uri
    5. Domains for 1mgq:
      1. 296556Domain d1mgqa_: 1mgq A: [79099]
      2. 296557Domain d1mgqb_: 1mgq B: [79100]
      3. 296558Domain d1mgqc_: 1mgq C: [79101]
      4. 296559Domain d1mgqd_: 1mgq D: [79102]
      5. 296560Domain d1mgqe_: 1mgq E: [79103]
      6. 296561Domain d1mgqf_: 1mgq F: [79104]
      7. 296562Domain d1mgqg_: 1mgq G: [79105]
  4. 296605Archaeon Pyrobaculum aerophilum [TaxId:13773] [63760] (2 PDB entries)
    smap1
    1. Domains for 1i8f:
      1. 296606Domain d1i8fa_: 1i8f A: [61959]
      2. 296607Domain d1i8fb_: 1i8f B: [61960]
      3. 296608Domain d1i8fc_: 1i8f C: [61961]
      4. 296609Domain d1i8fd_: 1i8f D: [61962]
      5. 296610Domain d1i8fe_: 1i8f E: [61963]
      6. 296611Domain d1i8ff_: 1i8f F: [61964]
      7. 296612Domain d1i8fg_: 1i8f G: [61965]
        complexed with gol
    2. Domains for 1lnx:
      1. 296613Domain d1lnxa_: 1lnx A: [84642]
      2. 296614Domain d1lnxb_: 1lnx B: [84643]
      3. 296615Domain d1lnxc_: 1lnx C: [84644]
      4. 296616Domain d1lnxd_: 1lnx D: [84645]
      5. 296617Domain d1lnxe_: 1lnx E: [84646]
      6. 296618Domain d1lnxf_: 1lnx F: [84647]
      7. 296619Domain d1lnxg_: 1lnx G: [84648]
        complexed with acy, gol, uri
  5. 296620Archaeon Pyrococcus abyssi [TaxId:29292] [82089] (2 PDB entries)
    1. Domains for 1h64:
      1. 296621Domain d1h641_: 1h64 1: [76675]
      2. 296622Domain d1h642_: 1h64 2: [76676]
      3. 296623Domain d1h64a_: 1h64 A: [76677]
      4. 296624Domain d1h64b_: 1h64 B: [76678]
      5. 296625Domain d1h64c_: 1h64 C: [76679]
      6. 296626Domain d1h64d_: 1h64 D: [76680]
      7. 296627Domain d1h64e_: 1h64 E: [76681]
      8. 296628Domain d1h64f_: 1h64 F: [76682]
      9. 296629Domain d1h64g_: 1h64 G: [76683]
      10. 296630Domain d1h64h_: 1h64 H: [76684]
      11. 296631Domain d1h64i_: 1h64 I: [76685]
      12. 296632Domain d1h64j_: 1h64 J: [76686]
      13. 296633Domain d1h64k_: 1h64 K: [76687]
      14. 296634Domain d1h64l_: 1h64 L: [76688]
      15. 296635Domain d1h64m_: 1h64 M: [76689]
      16. 296636Domain d1h64n_: 1h64 N: [76690]
      17. 296637Domain d1h64o_: 1h64 O: [76691]
      18. 296638Domain d1h64p_: 1h64 P: [76692]
      19. 296639Domain d1h64q_: 1h64 Q: [76693]
      20. 296640Domain d1h64r_: 1h64 R: [76694]
      21. 296641Domain d1h64s_: 1h64 S: [76695]
      22. 296642Domain d1h64t_: 1h64 T: [76696]
      23. 296643Domain d1h64u_: 1h64 U: [76697]
      24. 296644Domain d1h64v_: 1h64 V: [76698]
      25. 296645Domain d1h64w_: 1h64 W: [76699]
      26. 296646Domain d1h64x_: 1h64 X: [76700]
      27. 296647Domain d1h64y_: 1h64 Y: [76701]
      28. 296648Domain d1h64z_: 1h64 Z: [76702]
    2. Domains for 1m8v:
      1. 296649Domain d1m8va_: 1m8v A: [78814]
      2. 296650Domain d1m8vb_: 1m8v B: [78815]
      3. 296651Domain d1m8vc_: 1m8v C: [78816]
      4. 296652Domain d1m8vd_: 1m8v D: [78817]
      5. 296653Domain d1m8ve_: 1m8v E: [78818]
      6. 296654Domain d1m8vf_: 1m8v F: [78819]
      7. 296655Domain d1m8vg_: 1m8v G: [78820]
      8. 296656Domain d1m8vh_: 1m8v H: [78821]
      9. 296657Domain d1m8vi_: 1m8v I: [78822]
      10. 296658Domain d1m8vj_: 1m8v J: [78823]
      11. 296659Domain d1m8vk_: 1m8v K: [78824]
      12. 296660Domain d1m8vl_: 1m8v L: [78825]
      13. 296661Domain d1m8vm_: 1m8v M: [78826]
      14. 296662Domain d1m8vn_: 1m8v N: [78827]
        complexed with a uridine heptamer
        complexed with ca, u

More info for Protein Archaeal homoheptameric Sm protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP

Timeline for Protein Archaeal homoheptameric Sm protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP:

  • Protein Archaeal homoheptameric Sm protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP first appeared in SCOP 1.57
  • Protein Archaeal homoheptameric Sm protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP appears in SCOP 1.63
  • Protein Archaeal homoheptameric Sm protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP appears in SCOP 1.67
  • Protein Archaeal homoheptameric Sm protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP appears in the current release, SCOPe 2.08