SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family a.143.1.1: RNA polymerase omega subunit

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2013114Fold a.143: RPB6/omega subunit-like [63561] (1 superfamily)
    core: 2 helices and adjacent loops
  4. 2013115Superfamily a.143.1: RPB6/omega subunit-like [63562] (2 families) (S)
    the bacterial omega and eukaryotic RPB6 subunits both function in polymerase assembly; the common core is involved in conserved interactions with other subunits
  5. 2013116Family a.143.1.1: RNA polymerase omega subunit [63563] (2 protein domains)
    4 helices; irregular array

Protein Domains:

  1. 2013117RNA polymerase omega subunit [63564] (3 species)
    1. 2013118Species Thermus aquaticus [TaxId:271] [63565] (3 PDB entries)
    2. 2013122Species Thermus thermophilus HB8 [TaxId:300852] [158241] (6 PDB entries)
    3. 2013135Species Thermus thermophilus [TaxId:274] [74729] (11 PDB entries)
      Uniprot Q8RQE7; part of multichain biological unit
  2. 2013156automated matches [257263] (2 species)
    not a true protein
    1. 2013157Species Thermus thermophilus [TaxId:300852] [257264] (3 PDB entries)
    2. 2283211Species Thermus thermophilus [TaxId:274] [326512] (1 PDB entry)

More info for Family a.143.1.1: RNA polymerase omega subunit

Timeline for Family a.143.1.1: RNA polymerase omega subunit: