Lineage for d1fn4c1 (1fn4 C:1-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653751Species Rat (Rattus norvegicus) [TaxId:10116] [88532] (8 PDB entries)
  8. 653764Domain d1fn4c1: 1fn4 C:1-107 [59888]
    Other proteins in same PDB: d1fn4a2, d1fn4b1, d1fn4b2, d1fn4c2, d1fn4d1, d1fn4d2
    part of Fab 198 against acetylcholine receptor

Details for d1fn4c1

PDB Entry: 1fn4 (more details), 2.8 Å

PDB Description: crystal structure of fab198, an efficient protector of acetylcholine receptor against myasthenogenic antibodies
PDB Compounds: (C:) monoclonal antibody against acetylcholine receptor

SCOP Domain Sequences for d1fn4c1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1fn4c1 b.1.1.1 (C:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}
dikltqspsllsasvgdrvtlsckgsqninnylawyqqklgeapklliyntnslqtgips
rfsgsgsgtdytltisslqpedvatyfcyqynngytfgagtklelkr

SCOP Domain Coordinates for d1fn4c1:

Click to download the PDB-style file with coordinates for d1fn4c1.
(The format of our PDB-style files is described here.)

Timeline for d1fn4c1: