SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family g.3.7.5: Plant defensins

  1. Root: SCOPe 2.06
  2. 2229111Class g: Small proteins [56992] (94 folds)
  3. 2229389Fold g.3: Knottins (small inhibitors, toxins, lectins) [57015] (19 superfamilies)
    disulfide-bound fold; contains beta-hairpin with two adjacent disulfides
  4. 2229881Superfamily g.3.7: Scorpion toxin-like [57095] (6 families) (S)
  5. 2230174Family g.3.7.5: Plant defensins [57170] (9 protein domains)

Protein Domains:

  1. 2230175Antifungal protein 1 (RS-AFP1) [57174] (1 species)
  2. 2230178Antimicrobial protein 1 (AH-AMP1) [57176] (1 species)
  3. 2230181Brazzein [57178] (1 species)
    sweet protein
  4. 2230189Defensin 1 (PSD1) [69937] (1 species)
  5. 2230192Floral defensin 1 [103556] (3 species)
    flower-specific gamma-thionin
    1. 2230193Species Garden petunia (Petunia x hybrida), PHD1 [TaxId:4102] [103558] (1 PDB entry)
    2. 2230195Species Tobacco (Nicotiana tabacum), NAD1 [TaxId:4097] [103557] (1 PDB entry)
    3. 2230197Species Winged tobacco (Nicotiana alata) [TaxId:4087] [192452] (3 PDB entries)
  6. 2230216gamma-Thionin [57171] (2 species)
    1. 2230217Species Barley (Hordeum vulgare) [TaxId:4513] [57172] (1 PDB entry)
    2. 2230219Species English wheat (Triticum turgidum) [TaxId:4571] [57173] (1 PDB entry)
  7. 2230221S-locus pollen protein [103559] (1 species)
  8. 2230224Trypsin/chymotrypsin inhibitor ATT [82885] (1 species)
  9. 2230227automated matches [191215] (9 species)
    not a true protein
    1. 2230228Species Arabidopsis halleri [TaxId:81970] [256412] (1 PDB entry)
    2. 2230230Species J'oublie (Pentadiplandra brazzeana) [TaxId:43545] [255389] (3 PDB entries)
    3. 2230232Species Lens culinaris [TaxId:362247] [255440] (1 PDB entry)
    4. 2230234Species Mung bean (Vigna radiata) [TaxId:157791] [255190] (1 PDB entry)
    5. 2230236Species Pachyrhizus erosus [TaxId:109171] [189587] (1 PDB entry)
    6. 2230239Species Solanum lycopersicum [TaxId:4081] [271521] (1 PDB entry)
    7. 2274556Species Raphanus sativus [TaxId:3726] [317857] (1 PDB entry)
    8. 2280375Species Nicotiana suaveolens [TaxId:157071] [323676] (1 PDB entry)
    9. 2293969Species Nicotiana suaveolens [TaxId:200320] [337270] (1 PDB entry)

More info for Family g.3.7.5: Plant defensins

Timeline for Family g.3.7.5: Plant defensins: