Lineage for Species: Halobacterium salinarum [TaxId: 2242]

  1. Root: SCOPe 2.07
  2. 2575216Class f: Membrane and cell surface proteins and peptides [56835] (60 folds)
  3. 2576670Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
    core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane
  4. 2576671Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families) (S)
    Pfam PF13853. Phylogeny described in PubMed 12761335
  5. 2576672Family f.13.1.1: Bacteriorhodopsin-like [81319] (6 proteins)
  6. 2576677Protein Bacteriorhodopsin [56871] (3 species)
    a light-driven proton pump
  7. 2576682Species Halobacterium salinarum [TaxId:2242] [56873] (98 PDB entries)
    Uniprot P02945 17-245

PDB entries in Species: Halobacterium salinarum [TaxId: 2242]:

  1. Domain(s) for 1ap9:
  2. Domain(s) for 1at9:
  3. Domain(s) for 1brr:
    1. 2576781Domain d1brra_: 1brr A: [43421]
      complexed with arc, bgc, gol, oct, ret
    2. 2576782Domain d1brrb_: 1brr B: [43422]
      complexed with arc, bgc, gol, oct, ret
    3. 2576783Domain d1brrc_: 1brr C: [43423]
      complexed with arc, bgc, gol, oct, ret
  4. Domain(s) for 1brx:
  5. Domain(s) for 1c3w:
  6. Domain(s) for 1c8r:
  7. Domain(s) for 1c8s:
  8. Domain(s) for 1cwq:
    1. 2576725Domain d1cwqa_: 1cwq A: [43412]
      M intermediate structure (A) superimposed on the ground state structure (B)
      complexed with hex, oct, ret, trd, und
    2. 2576726Domain d1cwqb_: 1cwq B: [43413]
      M intermediate structure (A) superimposed on the ground state structure (B)
      complexed with hex, oct, ret, trd, und
  9. Domain(s) for 1dze:
    • 2576764Domain d1dzea_: 1dze A: [43419]
      M intermediate trapped at 100K
      complexed with l1p, l2p, l3p, l4p, ret
  10. Domain(s) for 1e0p:
  11. Domain(s) for 1f4z:
  12. Domain(s) for 1f50:
  13. Domain(s) for 1fbb:
  14. Domain(s) for 1fbk:
  15. Domain(s) for 1iw6:
  16. Domain(s) for 1iw9:
  17. Domain(s) for 1ixf:
  18. Domain(s) for 1jv6:
  19. Domain(s) for 1jv7:
  20. Domain(s) for 1kg8:
    • 2576702Domain d1kg8a_: 1kg8 A: [68579]
      an early-M intermediate
      complexed with li1, ret
  21. Domain(s) for 1kg9:
    • 2576698Domain d1kg9a_: 1kg9 A: [68580]
      a "mock-trapped" early-M intermediate
      complexed with li1, ret
  22. Domain(s) for 1kgb:
  23. Domain(s) for 1kme:
    1. 2576717Domain d1kmea_: 1kme A: [68692]
      complexed with bgc, ret, squ
    2. 2576718Domain d1kmeb_: 1kme B: [68693]
      complexed with bgc, ret, squ
  24. Domain(s) for 1l0m:
  25. Domain(s) for 1m0k:
  26. Domain(s) for 1m0l:
  27. Domain(s) for 1m0m:
  28. Domain(s) for 1mgy:
  29. Domain(s) for 1o0a:
  30. Domain(s) for 1p8h:
  31. Domain(s) for 1p8i:
  32. Domain(s) for 1p8u:
  33. Domain(s) for 1pxr:
    1. 2576695Domain d1pxra_: 1pxr A: [95297]
      complexed with ret; mutant
    2. 2576696Domain d1pxrb_: 1pxr B: [95298]
      complexed with ret; mutant
  34. Domain(s) for 1pxs:
    1. 2576720Domain d1pxsa_: 1pxs A: [95299]
      complexed with ret; mutant
    2. 2576721Domain d1pxsb_: 1pxs B: [95300]
      complexed with ret; mutant
  35. Domain(s) for 1py6:
    1. 2576700Domain d1py6a_: 1py6 A: [95327]
      complexed with ret
    2. 2576701Domain d1py6b_: 1py6 B: [95328]
      complexed with ret
  36. Domain(s) for 1q5i:
    1. 2576723Domain d1q5ia_: 1q5i A: [95896]
      complexed with ret; mutant
    2. 2576724Domain d1q5ib_: 1q5i B: [95897]
      complexed with ret; mutant
  37. Domain(s) for 1q5j:
    1. 2576715Domain d1q5ja_: 1q5j A: [95898]
      complexed with ret; mutant
    2. 2576716Domain d1q5jb_: 1q5j B: [95899]
      complexed with ret; mutant
  38. Domain(s) for 1qhj:
  39. Domain(s) for 1qko:
  40. Domain(s) for 1qkp:
  41. Domain(s) for 1qm8:
  42. Domain(s) for 1r2n:
  43. Domain(s) for 1r84:
  44. Domain(s) for 1s51:
    1. 2576707Domain d1s51a_: 1s51 A: [98517]
      complexed with ret
    2. 2576708Domain d1s51b_: 1s51 B: [98518]
      complexed with ret
  45. Domain(s) for 1s52:
    1. 2576730Domain d1s52a_: 1s52 A: [98519]
      complexed with ret
    2. 2576731Domain d1s52b_: 1s52 B: [98520]
      complexed with ret
  46. Domain(s) for 1s53:
    1. 2576709Domain d1s53a_: 1s53 A: [98521]
      complexed with ret
    2. 2576710Domain d1s53b_: 1s53 B: [98522]
      complexed with ret
  47. Domain(s) for 1s54:
    1. 2576738Domain d1s54a_: 1s54 A: [98523]
      complexed with ret
    2. 2576739Domain d1s54b_: 1s54 B: [98524]
      complexed with ret
  48. Domain(s) for 1s8j:
  49. Domain(s) for 1s8l:
  50. Domain(s) for 1tn0:
    1. 2576777Domain d1tn0a_: 1tn0 A: [112523]
      complexed with ret; mutant
    2. 2576778Domain d1tn0b_: 1tn0 B: [112524]
      complexed with ret; mutant
  51. Domain(s) for 1tn5:
    1. 2576740Domain d1tn5a_: 1tn5 A: [112525]
      complexed with ret; mutant
    2. 2576741Domain d1tn5b_: 1tn5 B: [112526]
      complexed with ret; mutant
  52. Domain(s) for 1ucq:
  53. Domain(s) for 1vjm:
  54. Domain(s) for 2at9:
  55. Domain(s) for 2ntu:
  56. Domain(s) for 2ntw:
  57. Domain(s) for 3coc:
    1. 2576768Domain d3coca_: 3coc A: [173370]
      automated match to d1cwqa_
      complexed with ret; mutant
    2. 2576769Domain d3cocb_: 3coc B: [173371]
      automated match to d1cwqa_
      complexed with ret; mutant
  58. Domain(s) for 3cod:
    1. 2576786Domain d3coda_: 3cod A: [173372]
      automated match to d1cwqa_
      complexed with ret; mutant
    2. 2576787Domain d3codb_: 3cod B: [173373]
      automated match to d1cwqa_
      complexed with ret; mutant
  59. Domain(s) for 3han:
  60. Domain(s) for 3hao:
    1. 2576774Domain d3haoa_: 3hao A: [177347]
      automated match to d1cwqa_
      complexed with ret; mutant
    2. 2576775Domain d3haob_: 3hao B: [177348]
      automated match to d1cwqa_
      complexed with ret; mutant
  61. Domain(s) for 3hap:
    • 2576703Domain d3hapa_: 3hap A: [177349]
      automated match to d1cwqa_
      complexed with cps, d10, d12, dd9, hp6, r16, ret; mutant
  62. Domain(s) for 3haq:
    • 2576766Domain d3haqa_: 3haq A: [177350]
      automated match to d1cwqa_
      complexed with cps, d10, d12, dd9, hp6, r16, ret; mutant
  63. Domain(s) for 3har:
  64. Domain(s) for 3has:
    • 2576732Domain d3hasa_: 3has A: [177352]
      automated match to d1cwqa_
      complexed with cps, d10, d12, hp6, oct, r16, ret; mutant
  65. Domain(s) for 4md1:
  66. Domain(s) for 4md2:
  67. Domain(s) for 4x32:
  68. Domain(s) for 4xxj:
    1. 2576735Domain d4xxja_: 4xxj A: [274557]
      automated match to d1cwqa_
      complexed with lfa, mpg
    2. 2576736Domain d4xxjb_: 4xxj B: [274558]
      automated match to d1cwqa_
      complexed with lfa, mpg
    3. 2576737Domain d4xxjc_: 4xxj C: [274559]
      automated match to d1cwqa_
      complexed with lfa, mpg
  69. Domain(s) for 5a44:
  70. Domain(s) for 5a45:
  71. Domain(s) for 5b34:
    • 2576761Domain d5b34a_: 5b34 A: [324854]
      automated match to d1p8ha_
      complexed with 4ql, d10, d12, dd9, hp6, oct, r16, ret
  72. Domain(s) for 5b35:
    • 2576771Domain d5b35a_: 5b35 A: [324861]
      automated match to d1p8ha_
      complexed with 4qm, d10, d12, dd9, hp6, oct, r16, ret
  73. Domain(s) for 5b6v:
    • 2576742Domain d5b6va_: 5b6v A: [327348]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  74. Domain(s) for 5b6w:
    • 2576748Domain d5b6wa_: 5b6w A: [327306]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  75. Domain(s) for 5b6x:
    • 2576752Domain d5b6xa_: 5b6x A: [327300]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  76. Domain(s) for 5b6y:
    • 2576756Domain d5b6ya_: 5b6y A: [327383]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  77. Domain(s) for 5b6z:
    • 2576757Domain d5b6za_: 5b6z A: [327305]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  78. Domain(s) for 5br2:
  79. Domain(s) for 5br5:
  80. Domain(s) for 5h2h:
    • 2576749Domain d5h2ha_: 5h2h A: [327394]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  81. Domain(s) for 5h2i:
    • 2576750Domain d5h2ia_: 5h2i A: [327351]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  82. Domain(s) for 5h2j:
    • 2576751Domain d5h2ja_: 5h2j A: [327341]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  83. Domain(s) for 5h2k:
    • 2576753Domain d5h2ka_: 5h2k A: [327340]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  84. Domain(s) for 5h2l:
    • 2576754Domain d5h2la_: 5h2l A: [327330]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  85. Domain(s) for 5h2m:
    • 2576755Domain d5h2ma_: 5h2m A: [327333]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  86. Domain(s) for 5h2n:
    • 2576758Domain d5h2na_: 5h2n A: [327362]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  87. Domain(s) for 5h2o:
    • 2576759Domain d5h2oa_: 5h2o A: [327339]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  88. Domain(s) for 5h2p:
    • 2576760Domain d5h2pa_: 5h2p A: [327356]
      automated match to d1qhja_
      complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  89. Domain(s) for 5j7a:
  90. Domain(s) for 5vn7:
    1. 2576784Domain d5vn7a_: 5vn7 A: [336675]
      automated match to d1m0ma_
    2. 2576785Domain d5vn7b_: 5vn7 B: [336678]
      automated match to d1m0ma_
  91. Domain(s) for 5vn9:
    1. 2576779Domain d5vn9a_: 5vn9 A: [336700]
      automated match to d1m0ma_
    2. 2576780Domain d5vn9b_: 5vn9 B: [336751]
      automated match to d1m0ma_
  92. Domain(s) for 5zim:
  93. Domain(s) for 5zin:
  94. Domain(s) for 6g7h:
  95. Domain(s) for 6g7i:
  96. Domain(s) for 6g7j:
  97. Domain(s) for 6g7k:
  98. Domain(s) for 6g7l:

More info for Species Halobacterium salinarum [TaxId:2242] from f.13.1.1 Bacteriorhodopsin

Timeline for Species Halobacterium salinarum [TaxId:2242] from f.13.1.1 Bacteriorhodopsin: