Lineage for Protein: Bacteriorhodopsin

  1. Root: SCOPe 2.07
  2. 2575216Class f: Membrane and cell surface proteins and peptides [56835] (60 folds)
  3. 2576670Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
    core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane
  4. 2576671Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families) (S)
    Pfam PF13853. Phylogeny described in PubMed 12761335
  5. 2576672Family f.13.1.1: Bacteriorhodopsin-like [81319] (6 proteins)
  6. 2576677Protein Bacteriorhodopsin [56871] (3 species)
    a light-driven proton pump

Species:

  1. 2576678Halobacterium halobium [TaxId:2242] [56872] (3 PDB entries)
    1. Domain for 1bm1:
    2. Domain for 1brd:
    3. Domain for 2brd:
  2. 2576682Halobacterium salinarum [TaxId:2242] [56873] (116 PDB entries)
    Uniprot P02945 17-245
    1. Domain for 1ap9:
    2. Domain for 1at9:
    3. Domains for 1brr:
      1. 2576781Domain d1brra_: 1brr A: [43421]
        complexed with arc, bgc, gol, oct, ret
      2. 2576782Domain d1brrb_: 1brr B: [43422]
        complexed with arc, bgc, gol, oct, ret
      3. 2576783Domain d1brrc_: 1brr C: [43423]
        complexed with arc, bgc, gol, oct, ret
    4. Domain for 1brx:
    5. Domain for 1c3w:
    6. Domain for 1c8r:
    7. Domain for 1c8s:
    8. Domains for 1cwq:
      1. 2576725Domain d1cwqa_: 1cwq A: [43412]
        M intermediate structure (A) superimposed on the ground state structure (B)
        complexed with hex, oct, ret, trd, und
      2. 2576726Domain d1cwqb_: 1cwq B: [43413]
        M intermediate structure (A) superimposed on the ground state structure (B)
        complexed with hex, oct, ret, trd, und
    9. Domain for 1dze:
      • 2576764Domain d1dzea_: 1dze A: [43419]
        M intermediate trapped at 100K
        complexed with l1p, l2p, l3p, l4p, ret
    10. Domain for 1e0p:
    11. Domain for 1f4z:
    12. Domain for 1f50:
    13. Domain for 1fbb:
    14. Domain for 1fbk:
    15. Domain for 1iw6:
    16. Domain for 1iw9:
    17. Domain for 1ixf:
    18. Domain for 1jv6:
    19. Domain for 1jv7:
    20. Domain for 1kg8:
      • 2576702Domain d1kg8a_: 1kg8 A: [68579]
        an early-M intermediate
        complexed with li1, ret
    21. Domain for 1kg9:
      • 2576698Domain d1kg9a_: 1kg9 A: [68580]
        a "mock-trapped" early-M intermediate
        complexed with li1, ret
    22. Domain for 1kgb:
    23. Domains for 1kme:
      1. 2576717Domain d1kmea_: 1kme A: [68692]
        complexed with bgc, ret, squ
      2. 2576718Domain d1kmeb_: 1kme B: [68693]
        complexed with bgc, ret, squ
    24. Domain for 1l0m:
    25. Domain for 1m0k:
    26. Domain for 1m0l:
    27. Domain for 1m0m:
    28. Domain for 1mgy:
    29. Domain for 1o0a:
    30. Domain for 1p8h:
    31. Domain for 1p8i:
    32. Domain for 1p8u:
    33. Domains for 1pxr:
      1. 2576695Domain d1pxra_: 1pxr A: [95297]
        complexed with ret; mutant
      2. 2576696Domain d1pxrb_: 1pxr B: [95298]
        complexed with ret; mutant
    34. Domains for 1pxs:
      1. 2576720Domain d1pxsa_: 1pxs A: [95299]
        complexed with ret; mutant
      2. 2576721Domain d1pxsb_: 1pxs B: [95300]
        complexed with ret; mutant
    35. Domains for 1py6:
      1. 2576700Domain d1py6a_: 1py6 A: [95327]
        complexed with ret
      2. 2576701Domain d1py6b_: 1py6 B: [95328]
        complexed with ret
    36. Domains for 1q5i:
      1. 2576723Domain d1q5ia_: 1q5i A: [95896]
        complexed with ret; mutant
      2. 2576724Domain d1q5ib_: 1q5i B: [95897]
        complexed with ret; mutant
    37. Domains for 1q5j:
      1. 2576715Domain d1q5ja_: 1q5j A: [95898]
        complexed with ret; mutant
      2. 2576716Domain d1q5jb_: 1q5j B: [95899]
        complexed with ret; mutant
    38. Domain for 1qhj:
    39. Domain for 1qko:
    40. Domain for 1qkp:
    41. Domain for 1qm8:
    42. Domain for 1r2n:
    43. Domain for 1r84:
    44. Domains for 1s51:
      1. 2576707Domain d1s51a_: 1s51 A: [98517]
        complexed with ret
      2. 2576708Domain d1s51b_: 1s51 B: [98518]
        complexed with ret
    45. Domains for 1s52:
      1. 2576730Domain d1s52a_: 1s52 A: [98519]
        complexed with ret
      2. 2576731Domain d1s52b_: 1s52 B: [98520]
        complexed with ret
    46. Domains for 1s53:
      1. 2576709Domain d1s53a_: 1s53 A: [98521]
        complexed with ret
      2. 2576710Domain d1s53b_: 1s53 B: [98522]
        complexed with ret
    47. Domains for 1s54:
      1. 2576738Domain d1s54a_: 1s54 A: [98523]
        complexed with ret
      2. 2576739Domain d1s54b_: 1s54 B: [98524]
        complexed with ret
    48. Domain for 1s8j:
    49. Domain for 1s8l:
    50. Domains for 1tn0:
      1. 2576777Domain d1tn0a_: 1tn0 A: [112523]
        complexed with ret; mutant
      2. 2576778Domain d1tn0b_: 1tn0 B: [112524]
        complexed with ret; mutant
    51. Domains for 1tn5:
      1. 2576740Domain d1tn5a_: 1tn5 A: [112525]
        complexed with ret; mutant
      2. 2576741Domain d1tn5b_: 1tn5 B: [112526]
        complexed with ret; mutant
    52. Domain for 1ucq:
    53. Domain for 1vjm:
    54. Domain for 2at9:
    55. Domain for 2ntu:
    56. Domain for 2ntw:
    57. Domains for 3coc:
      1. 2576768Domain d3coca_: 3coc A: [173370]
        automated match to d1cwqa_
        complexed with ret; mutant
      2. 2576769Domain d3cocb_: 3coc B: [173371]
        automated match to d1cwqa_
        complexed with ret; mutant
    58. Domains for 3cod:
      1. 2576786Domain d3coda_: 3cod A: [173372]
        automated match to d1cwqa_
        complexed with ret; mutant
      2. 2576787Domain d3codb_: 3cod B: [173373]
        automated match to d1cwqa_
        complexed with ret; mutant
    59. Domain for 3han:
    60. Domains for 3hao:
      1. 2576774Domain d3haoa_: 3hao A: [177347]
        automated match to d1cwqa_
        complexed with ret; mutant
      2. 2576775Domain d3haob_: 3hao B: [177348]
        automated match to d1cwqa_
        complexed with ret; mutant
    61. Domain for 3hap:
      • 2576703Domain d3hapa_: 3hap A: [177349]
        automated match to d1cwqa_
        complexed with cps, d10, d12, dd9, hp6, r16, ret; mutant
    62. Domain for 3haq:
      • 2576766Domain d3haqa_: 3haq A: [177350]
        automated match to d1cwqa_
        complexed with cps, d10, d12, dd9, hp6, r16, ret; mutant
    63. Domain for 3har:
    64. Domain for 3has:
      • 2576732Domain d3hasa_: 3has A: [177352]
        automated match to d1cwqa_
        complexed with cps, d10, d12, hp6, oct, r16, ret; mutant
    65. Domain for 4md1:
    66. Domain for 4md2:
    67. Domain for 4x32:
    68. Domains for 4xxj:
      1. 2576735Domain d4xxja_: 4xxj A: [274557]
        automated match to d1cwqa_
        complexed with lfa, mpg
      2. 2576736Domain d4xxjb_: 4xxj B: [274558]
        automated match to d1cwqa_
        complexed with lfa, mpg
      3. 2576737Domain d4xxjc_: 4xxj C: [274559]
        automated match to d1cwqa_
        complexed with lfa, mpg
    69. Domain for 5a44:
    70. Domain for 5a45:
    71. Domain for 5b34:
      • 2576761Domain d5b34a_: 5b34 A: [324854]
        automated match to d1p8ha_
        complexed with 4ql, d10, d12, dd9, hp6, oct, r16, ret
    72. Domain for 5b35:
      • 2576771Domain d5b35a_: 5b35 A: [324861]
        automated match to d1p8ha_
        complexed with 4qm, d10, d12, dd9, hp6, oct, r16, ret
    73. Domain for 5b6v:
      • 2576742Domain d5b6va_: 5b6v A: [327348]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    74. Domain for 5b6w:
      • 2576748Domain d5b6wa_: 5b6w A: [327306]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    75. Domain for 5b6x:
      • 2576752Domain d5b6xa_: 5b6x A: [327300]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    76. Domain for 5b6y:
      • 2576756Domain d5b6ya_: 5b6y A: [327383]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    77. Domain for 5b6z:
      • 2576757Domain d5b6za_: 5b6z A: [327305]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    78. Domain for 5br2:
    79. Domain for 5br5:
    80. Domain for 5h2h:
      • 2576749Domain d5h2ha_: 5h2h A: [327394]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    81. Domain for 5h2i:
      • 2576750Domain d5h2ia_: 5h2i A: [327351]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    82. Domain for 5h2j:
      • 2576751Domain d5h2ja_: 5h2j A: [327341]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    83. Domain for 5h2k:
      • 2576753Domain d5h2ka_: 5h2k A: [327340]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    84. Domain for 5h2l:
      • 2576754Domain d5h2la_: 5h2l A: [327330]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    85. Domain for 5h2m:
      • 2576755Domain d5h2ma_: 5h2m A: [327333]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    86. Domain for 5h2n:
      • 2576758Domain d5h2na_: 5h2n A: [327362]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    87. Domain for 5h2o:
      • 2576759Domain d5h2oa_: 5h2o A: [327339]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    88. Domain for 5h2p:
      • 2576760Domain d5h2pa_: 5h2p A: [327356]
        automated match to d1qhja_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    89. Domain for 5j7a:
    90. Domains for 5vn7:
      1. 2576784Domain d5vn7a_: 5vn7 A: [336675]
        automated match to d1m0ma_
      2. 2576785Domain d5vn7b_: 5vn7 B: [336678]
        automated match to d1m0ma_
    91. Domains for 5vn9:
      1. 2576779Domain d5vn9a_: 5vn9 A: [336700]
        automated match to d1m0ma_
      2. 2576780Domain d5vn9b_: 5vn9 B: [336751]
        automated match to d1m0ma_
    92. Domain for 5zim:
    93. Domain for 5zin:
    94. Domain for 6g7h:
    95. Domain for 6g7i:
    96. Domain for 6g7j:
    97. Domain for 6g7k:
    98. Domain for 6g7l:
    99. Domain for 6ga1:
      • 3068035Domain d6ga1a_: 6ga1 A: [368097]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    100. Domain for 6ga2:
      • 3068019Domain d6ga2a_: 6ga2 A: [368081]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    101. Domain for 6ga3:
      • 3068024Domain d6ga3a_: 6ga3 A: [368086]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    102. Domain for 6ga4:
      • 3068026Domain d6ga4a_: 6ga4 A: [368088]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    103. Domain for 6ga5:
      • 3068010Domain d6ga5a_: 6ga5 A: [368072]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    104. Domain for 6ga6:
      • 3068002Domain d6ga6a_: 6ga6 A: [368064]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    105. Domain for 6ga7:
      • 3068028Domain d6ga7a_: 6ga7 A: [368090]
        automated match to d1cwqa_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    106. Domain for 6ga8:
      • 3068027Domain d6ga8a_: 6ga8 A: [368089]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    107. Domain for 6ga9:
      • 3068033Domain d6ga9a_: 6ga9 A: [368095]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    108. Domain for 6gaa:
      • 3068014Domain d6gaaa_: 6gaa A: [368076]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    109. Domain for 6gab:
      • 3068017Domain d6gaba_: 6gab A: [368079]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    110. Domain for 6gac:
      • 3067999Domain d6gaca_: 6gac A: [368061]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    111. Domain for 6gad:
      • 3068001Domain d6gada_: 6gad A: [368063]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    112. Domain for 6gae:
      • 3068039Domain d6gaea_: 6gae A: [368101]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    113. Domain for 6gaf:
      • 3068025Domain d6gafa_: 6gaf A: [368087]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    114. Domain for 6gag:
      • 3068038Domain d6gaga_: 6gag A: [368100]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    115. Domain for 6gah:
      • 3068007Domain d6gaha_: 6gah A: [368069]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
    116. Domain for 6gai:
      • 3068034Domain d6gaia_: 6gai A: [368096]
        automated match to d1r2na_
        complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
  3. 2576796Halobacterium sp. [TaxId:64091] [346420] (7 PDB entries)
    1. Domain for 1r3p:
    2. Domains for 3t45:
      1. 2576805Domain d3t45a_: 3t45 A: [249774]
        automated match to d1r84a_
        complexed with li1, ret; mutant
      2. 2576806Domain d3t45b_: 3t45 B: [249775]
        automated match to d1r84a_
        complexed with li1, ret; mutant
      3. 2576807Domain d3t45c_: 3t45 C: [249776]
        automated match to d1r84a_
        complexed with li1, ret; mutant
    3. Domain for 3utv:
    4. Domain for 3utw:
    5. Domains for 3utx:
      1. 2576802Domain d3utxa_: 3utx A: [195407]
        automated match to d1cwqa_
        complexed with d12, ret; mutant
      2. 2576803Domain d3utxb_: 3utx B: [195406]
        automated match to d1cwqa_
        complexed with d12, ret; mutant
    6. Domains for 3uty:
      1. 2576800Domain d3utya_: 3uty A: [195404]
        automated match to d1cwqa_
        complexed with d12, ret; mutant
      2. 2576801Domain d3utyb_: 3uty B: [195402]
        automated match to d1cwqa_
        complexed with d12, ret; mutant
    7. Domain for 4ov0:

More info for Protein Bacteriorhodopsin from f.13.1.1: Bacteriorhodopsin-like

Timeline for Protein Bacteriorhodopsin from f.13.1.1: Bacteriorhodopsin-like: