Lineage for Protein: DNA polymerase I (Klenow fragment)

  1. Root: SCOPe 2.03
  2. 1449807Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
  3. 1451898Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 1451899Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 1451900Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
  6. 1451901Protein DNA polymerase I (Klenow fragment) [56674] (3 species)

Species:

  1. 1451902Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [56677] (44 PDB entries)
    Uniprot Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
    Uniprot Q45458 298-876 # 88% sequence identity
    1. Domain for 1l3s:
    2. Domain for 1l3t:
    3. Domain for 1l3u:
    4. Domain for 1l3v:
    5. Domain for 1l5u:
    6. Domains for 1lv5:
      1. 1451945Domain d1lv5a2: 1lv5 A:469-876 [84720]
        Other proteins in same PDB: d1lv5a1, d1lv5b1
        protein/DNA complex; complexed with dcp, mg, mn, so4
      2. 1451946Domain d1lv5b2: 1lv5 B:469-876 [84722]
        Other proteins in same PDB: d1lv5a1, d1lv5b1
        protein/DNA complex; complexed with dcp, mg, mn, so4
    7. Domain for 1njw:
    8. Domain for 1njx:
    9. Domain for 1njy:
    10. Domain for 1njz:
    11. Domain for 1nk0:
    12. Domain for 1nk4:
    13. Domain for 1nk5:
    14. Domain for 1nk6:
    15. Domain for 1nk7:
    16. Domain for 1nk8:
    17. Domain for 1nk9:
    18. Domain for 1nkb:
    19. Domain for 1nkc:
    20. Domain for 1nke:
    21. Domain for 1u45:
    22. Domain for 1u47:
    23. Domain for 1u48:
    24. Domain for 1u49:
    25. Domain for 1u4b:
    26. Domain for 1ua0:
    27. Domain for 1ua1:
    28. Domain for 1xc9:
    29. Domain for 1xwl:
    30. Domain for 2bdp:
    31. Domain for 2hhq:
    32. Domain for 2hhs:
    33. Domain for 2hht:
    34. Domain for 2hhu:
    35. Domain for 2hhv:
    36. Domains for 2hhw:
      1. 1451917Domain d2hhwa2: 2hhw A:469-876 [136517]
        Other proteins in same PDB: d2hhwa1, d2hhwd1
        automatically matched to d1l3sa2
        protein/DNA complex; complexed with 23t, mn, so4, suc
      2. 1451918Domain d2hhwd2: 2hhw D:469-876 [136519]
        Other proteins in same PDB: d2hhwa1, d2hhwd1
        automatically matched to d1l3sa2
        protein/DNA complex; complexed with 23t, mn, so4, suc
    37. Domain for 2hhx:
    38. Domains for 2hvh:
      1. 1451950Domain d2hvha2: 2hvh A:469-876 [136805]
        Other proteins in same PDB: d2hvha1, d2hvhd1
        protein/DNA complex; complexed with dct, mn, so4, suc
      2. 1451951Domain d2hvhd2: 2hvh D:469-876 [136807]
        Other proteins in same PDB: d2hvha1, d2hvhd1
        protein/DNA complex; complexed with dct, mn, so4, suc
    39. Domains for 2hvi:
      1. 1451927Domain d2hvia2: 2hvi A:469-876 [136809]
        Other proteins in same PDB: d2hvia1, d2hvid1
        protein/DNA complex; complexed with dct, mg, so4, suc
      2. 1451928Domain d2hvid2: 2hvi D:469-876 [136811]
        Other proteins in same PDB: d2hvia1, d2hvid1
        protein/DNA complex; complexed with dct, mg, so4, suc
    40. Domain for 2hw3:
    41. Domain for 3bdp:
    42. Domain for 3eyz:
    43. Domains for 3ez5:
      1. 1451924Domain d3ez5a2: 3ez5 A:469-876 [232130]
        Other proteins in same PDB: d3ez5a1, d3ez5d1
        automated match to d2hvia2
        protein/DNA complex; complexed with dad, so4, suc, zn
      2. 1451925Domain d3ez5d2: 3ez5 D:469-876 [232132]
        Other proteins in same PDB: d3ez5a1, d3ez5d1
        automated match to d2hvia2
        protein/DNA complex; complexed with dad, so4, suc, zn
    44. Domain for 4bdp:
  2. 1451952Escherichia coli [TaxId:562] [56675] (14 PDB entries)
    1. Domain for 1d8y:
    2. Domain for 1d9d:
    3. Domain for 1d9f:
    4. Domain for 1dpi:
    5. Domain for 1kfd:
    6. Domain for 1kfs:
    7. Domain for 1kln:
    8. Domain for 1krp:
    9. Domain for 1ksp:
    10. Domain for 1qsl:
    11. Domain for 2kfn:
    12. Domain for 2kfz:
    13. Domain for 2kzm:
    14. Domain for 2kzz:
  3. 1451967Thermus aquaticus [TaxId:271] [56676] (24 PDB entries)
    1. Domain for 1bgx:
    2. Domain for 1jxe:
    3. Domain for 1ktq:
    4. Domain for 1qss:
    5. Domain for 1qsy:
    6. Domain for 1qtm:
    7. Domain for 1taq:
    8. Domain for 1tau:
    9. Domain for 2ktq:
    10. Domain for 3ktq:
    11. Domain for 3m8r:
    12. Domain for 3m8s:
    13. Domain for 3oju:
    14. Domain for 3rr7:
    15. Domain for 3rr8:
    16. Domain for 3rrg:
    17. Domain for 3rrh:
    18. Domain for 3rtv:
    19. Domain for 3t3f:
    20. Domain for 4df4:
    21. Domain for 4dfp:
    22. Domain for 4dlg:
    23. Domain for 4ktq:
    24. Domain for 5ktq:

More info for Protein DNA polymerase I (Klenow fragment) from e.8.1.1: DNA polymerase I

Timeline for Protein DNA polymerase I (Klenow fragment) from e.8.1.1: DNA polymerase I: