Lineage for Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase

  1. Root: SCOPe 2.07
  2. 2618030Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2618349Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
    contains a cluster of helices and an alpha+beta sandwich
  4. 2618350Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families) (S)
  5. 2618351Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase [56602] (19 proteins)

Proteins:

  1. 26183526-aminohexanoate-dimer hydrolase NylC [160972] (1 species)
    NylB'
  2. 2618365AMPC beta-Lactamase, class C [56618] (4 species)
    contains small alpha+beta subdomain inserted in the common fold
    1. 2618366Species Chromohalobacter sp. [TaxId:169132] [270012] (7 PDB entries)
    2. 2618388Species Citrobacter freundii [TaxId:546] [56619] (3 PDB entries)
    3. 2618394Species Enterobacter cloacae, P99, cephalosporinase [TaxId:550] [56620] (10 PDB entries)
      Uniprot P05364 22-380 ! Uniprot P05364 22-381
    4. 2618407Species Escherichia coli, cephalosporinase [TaxId:562] [56621] (115 PDB entries)
  3. 2618634beta-Lactamase, class A [56606] (16 species)
    1. 2618635Species Bacillus licheniformis [TaxId:1402] [56612] (14 PDB entries)
    2. 2618662Species Enterobacter cloacae, NMC-A carbapenemase [TaxId:550] [56613] (2 PDB entries)
    3. 2618665Species Escherichia coli, TEM-1 [TaxId:562] [56607] (62 PDB entries)
    4. 2618785Species Escherichia coli, TOHO-1 [TaxId:562] [56608] (27 PDB entries)
    5. 2618814Species Klebsiella pneumoniae [TaxId:573] [225597] (9 PDB entries)
    6. 2618824Species Klebsiella pneumoniae, SHV-1 [TaxId:573] [56609] (27 PDB entries)
      inhibited by tazobactam
      Uniprot Q5PSW7 ! Uniprot P14557 22-286
    7. 2618852Species Klebsiella pneumoniae, SHV-2 [TaxId:573] [90082] (10 PDB entries)
      almost identical sequence to SHV-1
    8. 2618863Species Klebsiella pneumoniae, TEM52 [TaxId:573] [64473] (1 PDB entry)
    9. 2618870Species Mycobacterium fortuitum [TaxId:1766] [56615] (2 PDB entries)
    10. 2618873Species Proteus vulgaris [TaxId:585] [75596] (1 PDB entry)
    11. 2618876Species Pseudomonas aeruginosa, PER-1 [TaxId:287] [56616] (1 PDB entry)
    12. 2618878Species Pseudomonas aeruginosa, PSE-4 carbenicillinase [TaxId:287] [56610] (2 PDB entries)
    13. 2618881Species Serratia marcescens, Sme-1 [TaxId:615] [56617] (1 PDB entry)
      imipenem-hydrolyzing
    14. 2618884Species Staphylococcus aureus [TaxId:1280] [56611] (16 PDB entries)
    15. 2618903Species Stenotrophomonas maltophilia, L2 [TaxId:40324] [103374] (2 PDB entries)
    16. 2618908Species Streptomyces albus G [TaxId:1962] [56614] (1 PDB entry)
  4. 2618910Class D beta-lactamase [56622] (4 species)
    1. 2618911Species Escherichia coli, OXA-1 [TaxId:562] [82837] (4 PDB entries)
    2. 2618924Species Pseudomonas aeruginosa, OXA-10 [TaxId:287] [56623] (33 PDB entries)
    3. 2619011Species Pseudomonas aeruginosa, OXA-13 [TaxId:287] [64474] (4 PDB entries)
    4. 2619020Species Salmonella typhimurium, OXA-2 [TaxId:90371] [90083] (1 PDB entry)
  5. 2619023D,D-carboxypeptidase DacA, N-terminal domain [118181] (1 species)
  6. 2619029D-ala carboxypeptidase/transpeptidase [56603] (2 species)
    1. 2619030Species Streptomyces sp., K15 [TaxId:1931] [56604] (7 PDB entries)
    2. 2619038Species Streptomyces sp., R61 [TaxId:1931] [56605] (14 PDB entries)
      Uniprot P15555 34-378 ! Uniprot P15555
  7. 2619053D-Amino acid amidase DaaA [144038] (1 species)
  8. 2619091D-aminopeptidase, N-terminal domain [56626] (1 species)
  9. 2619094Esterase EstB [69873] (1 species)
  10. 2619100Pencillin binding protein 4 (PbpD), N-terminal domain [111287] (1 species)
  11. 2619108Penicillin binding protein 2a (PBP2A), C-terminal domain [82838] (1 species)
  12. 2619130Penicillin receptor BlaR, C-terminal domain [103375] (1 species)
    closely related to class D beta-lactamase
  13. 2619133Penicillin-binding protein 1a, transpeptidase domain [144034] (1 species)
  14. 2619137Penicillin-binding protein 1b, transpeptidase domain [144036] (1 species)
  15. 2619142Penicillin-binding protein 2, PBP2 [160970] (1 species)
  16. 2619151Penicillin-binding protein 2x (pbp-2x), transpeptidase domain [56624] (1 species)
  17. 2619171Penicillin-binding protein 5, N-terminal domain [69875] (1 species)
  18. 2619184Regulatory protein BlaR1 [111289] (1 species)
  19. 2619196automated matches [190161] (30 species)
    not a true protein
    1. 2619197Species Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [196311] (1 PDB entry)
    2. 2619199Species Bacillus licheniformis [TaxId:1402] [188244] (18 PDB entries)
    3. 2619235Species Citrobacter freundii [TaxId:546] [235913] (4 PDB entries)
    4. 2619248Species Citrobacter sedlakii [TaxId:67826] [188289] (5 PDB entries)
    5. 2619269Species Enterobacter cloacae [TaxId:550] [187307] (6 PDB entries)
    6. 2619279Species Escherichia coli [TaxId:1269009] [383839] (1 PDB entry)
    7. 2619284Species Escherichia coli [TaxId:469008] [188520] (1 PDB entry)
    8. 2619286Species Escherichia coli [TaxId:562] [187306] (106 PDB entries)
    9. 2619486Species Escherichia coli [TaxId:668369] [189787] (1 PDB entry)
    10. 2619491Species Escherichia coli [TaxId:83333] [321358] (1 PDB entry)
    11. 2619493Species Escherichia sp. [TaxId:299586] [188841] (1 PDB entry)
    12. 2619496Species Klebsiella oxytoca [TaxId:571] [188743] (1 PDB entry)
    13. 2619498Species Klebsiella pneumoniae [TaxId:1125630] [268559] (6 PDB entries)
    14. 2619505Species Klebsiella pneumoniae [TaxId:1276653] [388782] (1 PDB entry)
    15. 2619510Species Klebsiella pneumoniae [TaxId:1432554] [407388] (2 PDB entries)
    16. 2619513Species Klebsiella pneumoniae [TaxId:484021] [361809] (1 PDB entry)
    17. 2619515Species Klebsiella pneumoniae [TaxId:573] [188184] (9 PDB entries)
    18. 2619531Species Klebsiella pneumoniae [TaxId:72407] [271107] (1 PDB entry)
    19. 2619533Species Morganella morganii [TaxId:582] [226088] (1 PDB entry)
    20. 2619536Species Oceanobacillus iheyensis [TaxId:182710] [189232] (1 PDB entry)
    21. 2619538Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [188417] (5 PDB entries)
    22. 2619546Species Pseudomonas aeruginosa [TaxId:287] [225853] (6 PDB entries)
    23. 2619555Species Serratia fonticola [TaxId:47917] [195324] (4 PDB entries)
    24. 2619561Species Staphylococcus aureus [TaxId:1280] [189852] (11 PDB entries)
    25. 2619584Species Staphylococcus aureus [TaxId:158878] [256157] (6 PDB entries)
    26. 2619597Species Staphylococcus aureus [TaxId:93062] [352201] (11 PDB entries)
    27. 2619616Species Streptococcus pneumoniae [TaxId:171101] [352954] (2 PDB entries)
    28. 2619619Species Streptomyces sp. [TaxId:31952] [186885] (1 PDB entry)
    29. 2619621Species Vibrio cholerae [TaxId:666] [364228] (2 PDB entries)
    30. 2619627Species Yersinia enterocolitica [TaxId:393305] [278691] (1 PDB entry)

More info for Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase

Timeline for Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase: