Lineage for Family d.167.1.1: Peptide deformylase

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2558557Fold d.167: Peptide deformylase [56419] (1 superfamily)
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. 2558558Superfamily d.167.1: Peptide deformylase [56420] (2 families) (S)
    nickel-dependent enzyme
  5. 2558559Family d.167.1.1: Peptide deformylase [56421] (2 protein domains)
    automatically mapped to Pfam PF01327

Protein Domains:

  1. 2558560Peptide deformylase [56422] (11 species)
    1. 2558561Species Bacillus stearothermophilus [TaxId:1422] [75580] (1 PDB entry)
    2. 2558563Species Enterococcus faecalis [TaxId:1351] [225419] (2 PDB entries)
    3. 2558566Species Escherichia coli [TaxId:562] [56423] (21 PDB entries)
    4. 2558612Species Leptospira interrogans [TaxId:173] [103340] (5 PDB entries)
      Uniprot Q72S74
    5. 2558623Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [75581] (3 PDB entries)
    6. 2558646Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [90057] (8 PDB entries)
    7. 2558655Species Pseudomonas aeruginosa [TaxId:287] [75578] (4 PDB entries)
    8. 2558663Species Staphylococcus aureus [TaxId:1280] [75579] (4 PDB entries)
      Uniprot Q9F4L4
    9. 2558670Species Streptococcus pyogenes [TaxId:160490] [188359] (1 PDB entry)
    10. 2558672Species Thermotoga maritima [TaxId:2336] [90058] (1 PDB entry)
    11. 2558675Species Thermus thermophilus [TaxId:274] [118165] (1 PDB entry)
      Uniprot P43522
  2. 2558678automated matches [190200] (9 species)
    not a true protein
    1. 2558679Species Bacillus cereus [TaxId:226900] [188316] (1 PDB entry)
    2. 2558682Species Enterococcus faecium [TaxId:1352] [226815] (1 PDB entry)
    3. 2558685Species Escherichia coli [TaxId:469008] [194798] (3 PDB entries)
    4. 2558691Species Haemophilus influenzae [TaxId:281310] [279491] (2 PDB entries)
    5. 2558700Species Staphylococcus aureus [TaxId:1280] [186945] (1 PDB entry)
    6. 2558703Species Staphylococcus aureus [TaxId:93062] [192454] (4 PDB entries)
    7. 2558708Species Streptococcus agalactiae [TaxId:1311] [326636] (10 PDB entries)
    8. 2558719Species Streptococcus mutans [TaxId:210007] [255922] (1 PDB entry)
    9. 2558721Species Vibrio cholerae [TaxId:345073] [188814] (1 PDB entry)

More info for Family d.167.1.1: Peptide deformylase

Timeline for Family d.167.1.1: Peptide deformylase: