SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family d.167.1.1: Peptide deformylase

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2208465Fold d.167: Peptide deformylase [56419] (1 superfamily)
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. 2208466Superfamily d.167.1: Peptide deformylase [56420] (2 families) (S)
    nickel-dependent enzyme
  5. 2208467Family d.167.1.1: Peptide deformylase [56421] (2 protein domains)
    automatically mapped to Pfam PF01327

Protein Domains:

  1. 2208468Peptide deformylase [56422] (11 species)
    1. 2208469Species Bacillus stearothermophilus [TaxId:1422] [75580] (1 PDB entry)
    2. 2208471Species Enterococcus faecalis [TaxId:1351] [225419] (2 PDB entries)
    3. 2208474Species Escherichia coli [TaxId:562] [56423] (21 PDB entries)
    4. 2208520Species Leptospira interrogans [TaxId:173] [103340] (5 PDB entries)
      Uniprot Q72S74
    5. 2208531Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [75581] (3 PDB entries)
    6. 2208554Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [90057] (8 PDB entries)
    7. 2208563Species Pseudomonas aeruginosa [TaxId:287] [75578] (4 PDB entries)
    8. 2208571Species Staphylococcus aureus [TaxId:1280] [75579] (4 PDB entries)
      Uniprot Q9F4L4
    9. 2208578Species Streptococcus pyogenes [TaxId:160490] [188359] (1 PDB entry)
    10. 2208580Species Thermotoga maritima [TaxId:2336] [90058] (1 PDB entry)
    11. 2208583Species Thermus thermophilus [TaxId:274] [118165] (1 PDB entry)
      Uniprot P43522
  2. 2208586automated matches [190200] (9 species)
    not a true protein
    1. 2208587Species Bacillus cereus [TaxId:226900] [188316] (1 PDB entry)
    2. 2208590Species Enterococcus faecium [TaxId:1352] [226815] (1 PDB entry)
    3. 2208593Species Escherichia coli [TaxId:469008] [194798] (3 PDB entries)
    4. 2208599Species Haemophilus influenzae [TaxId:281310] [279491] (2 PDB entries)
    5. 2208608Species Staphylococcus aureus [TaxId:1280] [186945] (1 PDB entry)
    6. 2208611Species Staphylococcus aureus [TaxId:93062] [192454] (4 PDB entries)
    7. 2208616Species Streptococcus mutans [TaxId:210007] [255922] (1 PDB entry)
    8. 2208618Species Vibrio cholerae [TaxId:345073] [188814] (1 PDB entry)
    9. 2283335Species Streptococcus agalactiae [TaxId:1311] [326636] (10 PDB entries)

More info for Family d.167.1.1: Peptide deformylase

Timeline for Family d.167.1.1: Peptide deformylase: