Lineage for Family d.167.1.1: Peptide deformylase

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2208465Fold d.167: Peptide deformylase [56419] (1 superfamily)
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. 2208466Superfamily d.167.1: Peptide deformylase [56420] (2 families) (S)
    nickel-dependent enzyme
  5. 2208467Family d.167.1.1: Peptide deformylase [56421] (2 protein domains)
    automatically mapped to Pfam PF01327

Protein Domains:

  1. 2208468Peptide deformylase [56422] (11 species)
    1. 2208469Species Bacillus stearothermophilus [TaxId:1422] [75580] (1 PDB entry)
    2. 2208471Species Enterococcus faecalis [TaxId:1351] [225419] (2 PDB entries)
    3. 2208474Species Escherichia coli [TaxId:562] [56423] (21 PDB entries)
    4. 2208520Species Leptospira interrogans [TaxId:173] [103340] (5 PDB entries)
      Uniprot Q72S74
    5. 2208531Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [75581] (3 PDB entries)
    6. 2208554Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [90057] (8 PDB entries)
    7. 2208563Species Pseudomonas aeruginosa [TaxId:287] [75578] (4 PDB entries)
    8. 2208571Species Staphylococcus aureus [TaxId:1280] [75579] (4 PDB entries)
      Uniprot Q9F4L4
    9. 2208578Species Streptococcus pyogenes [TaxId:160490] [188359] (1 PDB entry)
    10. 2208580Species Thermotoga maritima [TaxId:2336] [90058] (1 PDB entry)
    11. 2208583Species Thermus thermophilus [TaxId:274] [118165] (1 PDB entry)
      Uniprot P43522
  2. 2208586automated matches [190200] (9 species)
    not a true protein
    1. 2208587Species Bacillus cereus [TaxId:226900] [188316] (1 PDB entry)
    2. 2208590Species Enterococcus faecium [TaxId:1352] [226815] (1 PDB entry)
    3. 2208593Species Escherichia coli [TaxId:469008] [194798] (3 PDB entries)
    4. 2208599Species Haemophilus influenzae [TaxId:281310] [279491] (2 PDB entries)
    5. 2208608Species Staphylococcus aureus [TaxId:1280] [186945] (1 PDB entry)
    6. 2208611Species Staphylococcus aureus [TaxId:93062] [192454] (4 PDB entries)
    7. 2208616Species Streptococcus mutans [TaxId:210007] [255922] (1 PDB entry)
    8. 2208618Species Vibrio cholerae [TaxId:345073] [188814] (1 PDB entry)
    9. 2283335Species Streptococcus agalactiae [TaxId:1311] [326636] (10 PDB entries)

More info for Family d.167.1.1: Peptide deformylase

Timeline for Family d.167.1.1: Peptide deformylase: