Lineage for Family d.153.1.4: Proteasome subunits

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1676433Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 1676434Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 1676603Family d.153.1.4: Proteasome subunits [56251] (4 proteins)

Proteins:

  1. 1676604HslV (ClpQ) protease [56258] (4 species)
    dodecameric prokaryotic homologue of proteasome
    1. 1676605Species Bacillus subtilis [TaxId:1423] [160845] (2 PDB entries)
      Uniprot P39070 2-181
    2. 1676620Species Escherichia coli [TaxId:562] [56259] (8 PDB entries)
    3. 1676668Species Haemophilus influenzae [TaxId:727] [56260] (6 PDB entries)
    4. 1676711Species Thermotoga maritima [TaxId:2336] [90045] (1 PDB entry)
  2. 1676715Proteasome alpha subunit (non-catalytic) [56255] (7 species)
    contains an extension to the common fold at the N-terminus
    1. 1676716Species Archaeoglobus fulgidus [TaxId:2234] [90044] (2 PDB entries)
    2. 1676731Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56257] (66 PDB entries)
      The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)
    3. 1677230Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [256264] (1 PDB entry)
    4. 1677232Species Cow (Bos taurus) [TaxId:9913] [75568] (1 PDB entry)
    5. Species Mouse (Mus musculus) [TaxId:10090] [195927] (2 PDB entries)
    6. 1677252Species Rhodococcus erythropolis [TaxId:1833] [103314] (3 PDB entries)
    7. 1677274Species Thermoplasma acidophilum [TaxId:2303] [56256] (3 PDB entries)
  3. 1677317Proteasome beta subunit (catalytic) [56252] (5 species)
    1. 1677318Species Archaeoglobus fulgidus [TaxId:2234] [90043] (1 PDB entry)
    2. 1677326Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56254] (62 PDB entries)
      The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)
    3. 1678167Species Cow (Bos taurus) [TaxId:9913] [75567] (1 PDB entry)
    4. 1678182Species Rhodococcus erythropolis [TaxId:1833] [103313] (3 PDB entries)
    5. 1678204Species Thermoplasma acidophilum [TaxId:2303] [56253] (5 PDB entries)
  4. 1678261automated matches [190144] (7 species)
    not a true protein
    1. 1678262Species Bacillus anthracis [TaxId:198094] [189742] (1 PDB entry)
    2. 1678269Species Bacillus subtilis [TaxId:1423] [187296] (1 PDB entry)
    3. 1678282Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187078] (39 PDB entries)
    4. 1678524Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [189752] (31 PDB entries)
    5. Species Mouse (Mus musculus) [TaxId:10090] [195917] (2 PDB entries)
    6. 1678706Species Mycobacterium tuberculosis [TaxId:1773] [187707] (9 PDB entries)
    7. 1678961Species Thermoplasma acidophilum [TaxId:2303] [186869] (7 PDB entries)

More info for Family d.153.1.4: Proteasome subunits

Timeline for Family d.153.1.4: Proteasome subunits: