SCOPe 2.08: Protein: Biotin carboxylase (BC), domain 2

Lineage for Protein: Biotin carboxylase (BC), domain 2

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.142: ATP-grasp [56058] (2 superfamilies)
Consists of two subdomains with different alpha+beta folds
shares functional and structural similarities with the PIPK and protein kinase superfamilies
Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families)
Family d.142.1.2: BC ATP-binding domain-like [56067] (7 proteins)
Protein Biotin carboxylase (BC), domain 2 [56068] (2 species)
subunit of acetyl-CoA and pyruvate carboxylases

Species:

Aquifex aeolicus [TaxId:63363] [103284] (1 PDB entry)
- Domain for 1ulz:
  - Domain d1ulza3: 1ulz A:115-328 [99577]
    Other proteins in same PDB: d1ulza1, d1ulza2

Escherichia coli [TaxId:562] [56069] (24 PDB entries)

Domains for 1bnc:
1. Domain d1bnca3: 1bnc A:115-330 [41488]
  Other proteins in same PDB: d1bnca1, d1bnca2, d1bncb1, d1bncb2
  complexed with po4
2. Domain d1bncb3: 1bnc B:115-330 [41489]
  Other proteins in same PDB: d1bnca1, d1bnca2, d1bncb1, d1bncb2
  complexed with po4
Domains for 1dv1:
1. Domain d1dv1a3: 1dv1 A:115-330 [41486]
  Other proteins in same PDB: d1dv1a1, d1dv1a2, d1dv1b1, d1dv1b2
  complexed with po4
2. Domain d1dv1b3: 1dv1 B:115-330 [41487]
  Other proteins in same PDB: d1dv1a1, d1dv1a2, d1dv1b1, d1dv1b2
  complexed with po4
Domains for 1dv2:
1. Domain d1dv2a3: 1dv2 A:115-330 [41490]
  Other proteins in same PDB: d1dv2a1, d1dv2a2, d1dv2a4, d1dv2b1, d1dv2b2, d1dv2b4
  complexed with atp; mutant
2. Domain d1dv2b3: 1dv2 B:115-330 [41491]
  Other proteins in same PDB: d1dv2a1, d1dv2a2, d1dv2a4, d1dv2b1, d1dv2b2, d1dv2b4
  complexed with atp; mutant
Domains for 2gps:
1. Domain d2gpsa3: 2gps A:115-330 [135489]
  Other proteins in same PDB: d2gpsa1, d2gpsa2, d2gpsa4, d2gpsb1, d2gpsb2, d2gpsb4
  automated match to d1dv2a3
  mutant
2. Domain d2gpsb3: 2gps B:115-330 [135492]
  Other proteins in same PDB: d2gpsa1, d2gpsa2, d2gpsa4, d2gpsb1, d2gpsb2, d2gpsb4
  automated match to d1dv2a3
  mutant

Domains for 2gpw:

Domain d2gpwa3: 2gpw A:115-330 [135499]
Other proteins in same PDB: d2gpwa1, d2gpwa2, d2gpwa4, d2gpwb1, d2gpwb2, d2gpwb4, d2gpwc1, d2gpwc2, d2gpwc4, d2gpwd1, d2gpwd2, d2gpwd4
automated match to d1dv2a3
mutant

Domain d2gpwb3: 2gpw B:115-330 [135502]
Other proteins in same PDB: d2gpwa1, d2gpwa2, d2gpwa4, d2gpwb1, d2gpwb2, d2gpwb4, d2gpwc1, d2gpwc2, d2gpwc4, d2gpwd1, d2gpwd2, d2gpwd4
automated match to d1dv2a3
mutant

Domain d2gpwc3: 2gpw C:115-330 [135505]
Other proteins in same PDB: d2gpwa1, d2gpwa2, d2gpwa4, d2gpwb1, d2gpwb2, d2gpwb4, d2gpwc1, d2gpwc2, d2gpwc4, d2gpwd1, d2gpwd2, d2gpwd4
automated match to d1dv2a3
mutant

Domain d2gpwd3: 2gpw D:115-330 [135508]
Other proteins in same PDB: d2gpwa1, d2gpwa2, d2gpwa4, d2gpwb1, d2gpwb2, d2gpwb4, d2gpwc1, d2gpwc2, d2gpwc4, d2gpwd1, d2gpwd2, d2gpwd4
automated match to d1dv2a3
mutant

Domains for 2j9g:
1. Domain d2j9ga3: 2j9g A:115-330 [147939]
  Other proteins in same PDB: d2j9ga1, d2j9ga2, d2j9gb1, d2j9gb2
  automated match to d1dv1a3
  complexed with adp, anp, mg, so4
2. Domain d2j9gb3: 2j9g B:115-330 [147942]
  Other proteins in same PDB: d2j9ga1, d2j9ga2, d2j9gb1, d2j9gb2
  automated match to d1dv1b3
  complexed with adp, anp, mg, so4
Domains for 2v58:
1. Domain d2v58a2: 2v58 A:115-330 [206212]
  Other proteins in same PDB: d2v58a1, d2v58a3, d2v58b1, d2v58b3
  automated match to d1dv1b3
  complexed with cl, lzj
2. Domain d2v58b2: 2v58 B:115-330 [206215]
  Other proteins in same PDB: d2v58a1, d2v58a3, d2v58b1, d2v58b3
  automated match to d1dv1a3
  complexed with cl, lzj
Domains for 2v59:
1. Domain d2v59a2: 2v59 A:115-330 [206218]
  Other proteins in same PDB: d2v59a1, d2v59a3, d2v59b1, d2v59b3
  automated match to d1dv1a3
  complexed with lzk
2. Domain d2v59b2: 2v59 B:115-330 [206221]
  Other proteins in same PDB: d2v59a1, d2v59a3, d2v59b1, d2v59b3
  automated match to d1dv1a3
  complexed with lzk
Domains for 2v5a:
1. Domain d2v5aa2: 2v5a A:115-330 [206224]
  Other proteins in same PDB: d2v5aa1, d2v5aa3, d2v5ab1, d2v5ab3
  automated match to d1dv1b3
  complexed with cl, lzl
2. Domain d2v5ab2: 2v5a B:115-330 [206227]
  Other proteins in same PDB: d2v5aa1, d2v5aa3, d2v5ab1, d2v5ab3
  automated match to d1dv1a3
  complexed with cl, lzl
Domains for 2vr1:
1. Domain d2vr1a3: 2vr1 A:115-330 [153491]
  Other proteins in same PDB: d2vr1a1, d2vr1a2, d2vr1b1, d2vr1b2
  automated match to d1dv1a3
  complexed with atf, cl
2. Domain d2vr1b3: 2vr1 B:115-330 [153494]
  Other proteins in same PDB: d2vr1a1, d2vr1a2, d2vr1b1, d2vr1b2
  automated match to d1dv1a3
  complexed with atf, cl
Domains for 2w6m:
1. Domain d2w6ma2: 2w6m A:115-330 [206643]
  Other proteins in same PDB: d2w6ma1, d2w6ma3, d2w6mb1, d2w6mb3
  automated match to d1dv1b3
  complexed with cl, oa1
2. Domain d2w6mb2: 2w6m B:115-330 [206646]
  Other proteins in same PDB: d2w6ma1, d2w6ma3, d2w6mb1, d2w6mb3
  automated match to d1dv1a3
  complexed with cl, oa1
Domains for 2w6n:
1. Domain d2w6na2: 2w6n A:115-330 [206649]
  Other proteins in same PDB: d2w6na1, d2w6na3, d2w6nb1, d2w6nb3
  automated match to d1dv1a3
  complexed with cl, oa2
2. Domain d2w6nb2: 2w6n B:115-330 [206652]
  Other proteins in same PDB: d2w6na1, d2w6na3, d2w6nb1, d2w6nb3
  automated match to d1dv1a3
  complexed with cl, oa2
Domains for 2w6o:
1. Domain d2w6oa2: 2w6o A:115-330 [206655]
  Other proteins in same PDB: d2w6oa1, d2w6oa3, d2w6oc1, d2w6oc3
  automated match to d1dv1a3
  complexed with cl, oa3
2. Domain d2w6oc2: 2w6o C:115-330 [206658]
  Other proteins in same PDB: d2w6oa1, d2w6oa3, d2w6oc1, d2w6oc3
  automated match to d1dv1a3
  complexed with cl, oa3

Domains for 2w6p:

Domain d2w6pa2: 2w6p A:115-330 [206661]
Other proteins in same PDB: d2w6pa1, d2w6pa3, d2w6pb1, d2w6pb3
automated match to d1dv1a3
complexed with oa4

Domain d2w6pb2: 2w6p B:115-330 [206664]
Other proteins in same PDB: d2w6pa1, d2w6pa3, d2w6pb1, d2w6pb3
automated match to d1dv1a3
complexed with oa4
fragment; missing more than one-third of the common structure and/or sequence

Domains for 2w6q:
1. Domain d2w6qa2: 2w6q A:115-330 [206667]
  Other proteins in same PDB: d2w6qa1, d2w6qa3, d2w6qb1, d2w6qb3
  automated match to d1dv1b3
  complexed with cl, oa5
2. Domain d2w6qb2: 2w6q B:115-330 [206670]
  Other proteins in same PDB: d2w6qa1, d2w6qa3, d2w6qb1, d2w6qb3
  automated match to d1dv1a3
  complexed with cl, oa5
Domains for 2w6z:
1. Domain d2w6za2: 2w6z A:115-330 [206673]
  Other proteins in same PDB: d2w6za1, d2w6za3, d2w6zb1, d2w6zb3
  automated match to d1dv1b3
  complexed with cl, l21
2. Domain d2w6zb2: 2w6z B:115-330 [206676]
  Other proteins in same PDB: d2w6za1, d2w6za3, d2w6zb1, d2w6zb3
  automated match to d1dv1a3
  complexed with cl, l21
Domains for 2w70:
1. Domain d2w70a2: 2w70 A:115-330 [206679]
  Other proteins in same PDB: d2w70a1, d2w70a3, d2w70b1, d2w70b3
  automated match to d1dv1a3
  complexed with cl, l22
2. Domain d2w70b2: 2w70 B:115-330 [206682]
  Other proteins in same PDB: d2w70a1, d2w70a3, d2w70b1, d2w70b3
  automated match to d1dv1a3
  complexed with cl, l22
Domains for 2w71:
1. Domain d2w71a2: 2w71 A:115-330 [206685]
  Other proteins in same PDB: d2w71a1, d2w71a3, d2w71c1, d2w71c3
  automated match to d1dv1b3
  complexed with cl, l23
2. Domain d2w71c2: 2w71 C:115-330 [206688]
  Other proteins in same PDB: d2w71a1, d2w71a3, d2w71c1, d2w71c3
  automated match to d1dv1b3
  complexed with cl, l23
Domain for 3jzf:
- Domain d3jzfb2: 3jzf B:115-330 [247077]
  Other proteins in same PDB: d3jzfa1, d3jzfa2, d3jzfb1, d3jzfb3, d3jzfb4
  automated match to d1dv2a3
  complexed with co3, jzk
Domains for 3jzi:
1. Domain d3jzia2: 3jzi A:115-330 [247080]
  Other proteins in same PDB: d3jzia1, d3jzia3, d3jzib1, d3jzib3, d3jzib4
  automated match to d1dv2a3
  complexed with jzl
2. Domain d3jzib2: 3jzi B:115-330 [247083]
  Other proteins in same PDB: d3jzia1, d3jzia3, d3jzib1, d3jzib3, d3jzib4
  automated match to d1dv2a3
  complexed with jzl
Domains for 3rup:
1. Domain d3rupa2: 3rup A:115-330 [249212]
  Other proteins in same PDB: d3rupa1, d3rupa3, d3rupa4, d3rupb1, d3rupb3, d3rupb4
  automated match to d1dv2a3
  complexed with adp, ca, cl
2. Domain d3rupb2: 3rup B:115-330 [249215]
  Other proteins in same PDB: d3rupa1, d3rupa3, d3rupa4, d3rupb1, d3rupb3, d3rupb4
  automated match to d1dv2a3
  complexed with adp, ca, cl
Domains for 3rv3:
1. Domain d3rv3a2: 3rv3 A:115-330 [249228]
  Other proteins in same PDB: d3rv3a1, d3rv3a3, d3rv3b1, d3rv3b3, d3rv3b4
  automated match to d1dv2a3
  complexed with adp, mg
2. Domain d3rv3b2: 3rv3 B:115-330 [249231]
  Other proteins in same PDB: d3rv3a1, d3rv3a3, d3rv3b1, d3rv3b3, d3rv3b4
  automated match to d1dv2a3
  complexed with adp, mg
Domain for 3rv4:
- Domain d3rv4a2: 3rv4 A:115-330 [249234]
  Other proteins in same PDB: d3rv4a1, d3rv4a3, d3rv4a4
  automated match to d1dv2a3
  complexed with adp, bct, cl, cs, gol, mg, moh, na; mutant

Domains for 4hr7:

Domain d4hr7a2: 4hr7 A:115-330 [222721]
Other proteins in same PDB: d4hr7a1, d4hr7a3, d4hr7b_, d4hr7c1, d4hr7c3, d4hr7d_, d4hr7e1, d4hr7e3, d4hr7f1, d4hr7f3, d4hr7g_, d4hr7i_
automated match to d1dv1a3
complexed with edo, so4

Domain d4hr7c2: 4hr7 C:115-330 [222724]
Other proteins in same PDB: d4hr7a1, d4hr7a3, d4hr7b_, d4hr7c1, d4hr7c3, d4hr7d_, d4hr7e1, d4hr7e3, d4hr7f1, d4hr7f3, d4hr7g_, d4hr7i_
automated match to d1dv1a3
complexed with edo, so4

Domain d4hr7e2: 4hr7 E:115-330 [222727]
Other proteins in same PDB: d4hr7a1, d4hr7a3, d4hr7b_, d4hr7c1, d4hr7c3, d4hr7d_, d4hr7e1, d4hr7e3, d4hr7f1, d4hr7f3, d4hr7g_, d4hr7i_
automated match to d1dv1a3
complexed with edo, so4

Domain d4hr7f2: 4hr7 F:115-330 [222730]
Other proteins in same PDB: d4hr7a1, d4hr7a3, d4hr7b_, d4hr7c1, d4hr7c3, d4hr7d_, d4hr7e1, d4hr7e3, d4hr7f1, d4hr7f3, d4hr7g_, d4hr7i_
automated match to d1dv1a3
complexed with edo, so4

More info for Protein Biotin carboxylase (BC), domain 2 from d.142.1.2: BC ATP-binding domain-like

Timeline for Protein Biotin carboxylase (BC), domain 2 from d.142.1.2: BC ATP-binding domain-like:

Protein Biotin carboxylase (BC), domain 2 from d.142.1.2: BC ATP-binding domain-like first appeared (with stable ids) in SCOP 1.55, called Protein Biotin carboxylase subunit of acetyl-CoA carboxylase from d.142.1.2: Biotin carboxylase/Carbamoyl phosphate synthetase
Protein Biotin carboxylase (BC), domain 2 from d.142.1.2: BC ATP-binding domain-like appears in SCOPe 2.07