SCOPe 2.08: Family d.129.3.3: Ring hydroxylating alpha subunit catalytic domain

Lineage for Family d.129.3.3: Ring hydroxylating alpha subunit catalytic domain

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.129: TBP-like [55944] (11 superfamilies)
   beta-alpha-beta(4)-alpha

4. Superfamily d.129.3: Bet v1-like [55961] (11 families)
   contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix

5. Family d.129.3.3: Ring hydroxylating alpha subunit catalytic domain [55969] (7 proteins)
   Pfam PF00848; contains a few insertion and C-terminal extension compared with Bet v1

Proteins:

1. 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO [143823] (1 species)

   • Species Pseudomonas putida [TaxId:303] [143824] (3 PDB entries)
     Uniprot O05935 164-442

2. Biphenyl dioxygenase large subunit BphA1, C-terminal domain [111166] (1 species)

   • Species Rhodococcus sp. RHA1 [TaxId:101510] [111167] (2 PDB entries)
     Uniprot Q53122 17-451

3. Large subunit of cumene dioxygenase cumA1 [143825] (1 species)

   • Species Pseudomonas fluorescens [TaxId:294] [143826] (1 PDB entry)
     Uniprot Q51743 181-459

4. Naphthalene 1,2-dioxygenase alpha subunit, C-domain [55970] (5 species)

   1. Species Pseudomonas putida [TaxId:303] [55971] (10 PDB entries)

   2. Species Pseudomonas sp. [TaxId:306] [255217] (3 PDB entries)

   3. Species Pseudomonas sp. [TaxId:69011] [228600] (14 PDB entries)

   4. Species Rhodococcus sp. ncimb12038 [TaxId:92694] [143822] (1 PDB entry)
      Uniprot Q9X3R9 163-441

   5. Species Rhodococcus sp. [TaxId:92694] [255043] (1 PDB entry)

5. Nitrobenzene dioxygenase alpha subunit, NBDO-alpha [143829] (1 species)

   • Species Comamonas sp. JS765 [TaxId:58226] [143830] (3 PDB entries)
     Uniprot Q8RTL4 153-439

6. Terminal oxygenase component of carbazole CarAa [143827] (1 species)

   • Species Janthinobacterium sp. J3 [TaxId:213804] [143828] (4 PDB entries)
     Uniprot Q84II6 143-384

7. automated matches [319939] (2 species)
   not a true protein

   1. Species Diaphorobacter sp. [TaxId:1302548] [319940] (1 PDB entry)

   2. Species Janthinobacterium sp. [TaxId:213804] [399623] (9 PDB entries)

More info for Family d.129.3.3: Ring hydroxylating alpha subunit catalytic domain

Timeline for Family d.129.3.3: Ring hydroxylating alpha subunit catalytic domain:

• Family d.129.3.3: Ring hydroxylating alpha subunit catalytic domain first appeared (with stable ids) in SCOP 1.55, called Family d.129.3.3: Naphthalene 1,2-dioxygenase alpha subunit, C-domain
  
• Family d.129.3.3: Ring hydroxylating alpha subunit catalytic domain appears in SCOPe 2.07