SCOPe 2.08: Protein: TATA-box binding protein (TBP), C-terminal domain

Lineage for Protein: TATA-box binding protein (TBP), C-terminal domain

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.129: TBP-like [55944] (11 superfamilies)
beta-alpha-beta(4)-alpha
Superfamily d.129.1: TATA-box binding protein-like [55945] (3 families)
Family d.129.1.1: TATA-box binding protein (TBP), C-terminal domain [55946] (1 protein)
duplication: consists of two clear structural repeats
automatically mapped to Pfam PF00352
Protein TATA-box binding protein (TBP), C-terminal domain [55947] (5 species)
structure of the N-terminal domain is not known yet

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55950] (7 PDB entries)
1. Domains for 1ngm:
  1. Domain d1ngma1: 1ngm A:61-155 [85685]
    Other proteins in same PDB: d1ngmb1, d1ngmb2, d1ngmf1, d1ngmf2, d1ngmj_, d1ngmn_
    a ternary complex with DNA and Brf1 peptide
    protein/DNA complex
  2. Domain d1ngma2: 1ngm A:156-240 [85686]
    Other proteins in same PDB: d1ngmb1, d1ngmb2, d1ngmf1, d1ngmf2, d1ngmj_, d1ngmn_
    a ternary complex with DNA and Brf1 peptide
    protein/DNA complex
  3. Domain d1ngme1: 1ngm E:61-155 [85688]
    Other proteins in same PDB: d1ngmb1, d1ngmb2, d1ngmf1, d1ngmf2, d1ngmj_, d1ngmn_
    a ternary complex with DNA and Brf1 peptide
    protein/DNA complex
  4. Domain d1ngme2: 1ngm E:156-240 [85689]
    Other proteins in same PDB: d1ngmb1, d1ngmb2, d1ngmf1, d1ngmf2, d1ngmj_, d1ngmn_
    a ternary complex with DNA and Brf1 peptide
    protein/DNA complex
  5. Domain d1ngmi1: 1ngm I:61-155 [85691]
    Other proteins in same PDB: d1ngmb1, d1ngmb2, d1ngmf1, d1ngmf2, d1ngmj_, d1ngmn_
    a ternary complex with DNA and Brf1 peptide
    protein/DNA complex
  6. Domain d1ngmi2: 1ngm I:156-240 [85692]
    Other proteins in same PDB: d1ngmb1, d1ngmb2, d1ngmf1, d1ngmf2, d1ngmj_, d1ngmn_
    a ternary complex with DNA and Brf1 peptide
    protein/DNA complex
  7. Domain d1ngmm1: 1ngm M:61-155 [85694]
    Other proteins in same PDB: d1ngmb1, d1ngmb2, d1ngmf1, d1ngmf2, d1ngmj_, d1ngmn_
    a ternary complex with DNA and Brf1 peptide
    protein/DNA complex
  8. Domain d1ngmm2: 1ngm M:156-240 [85695]
    Other proteins in same PDB: d1ngmb1, d1ngmb2, d1ngmf1, d1ngmf2, d1ngmj_, d1ngmn_
    a ternary complex with DNA and Brf1 peptide
    protein/DNA complex
2. Domains for 1nh2:
  1. Domain d1nh2a1: 1nh2 A:61-155 [91872]
    Other proteins in same PDB: d1nh2b_, d1nh2c_, d1nh2d1, d1nh2d2
    protein/DNA complex
  2. Domain d1nh2a2: 1nh2 A:156-240 [91873]
    Other proteins in same PDB: d1nh2b_, d1nh2c_, d1nh2d1, d1nh2d2
    protein/DNA complex
3. Domains for 1rm1:
  1. Domain d1rm1a1: 1rm1 A:61-148 [118778]
    Other proteins in same PDB: d1rm1b1, d1rm1b2
    automated match to d1mp9b1
    protein/DNA complex
  2. Domain d1rm1a2: 1rm1 A:149-240 [118779]
    Other proteins in same PDB: d1rm1b1, d1rm1b2
    automated match to d1mp9b2
    protein/DNA complex
4. Domains for 1tba:
  1. Domain d1tbab1: 1tba B:61-155 [41286]
    Other proteins in same PDB: d1tbaa_
  2. Domain d1tbab2: 1tba B:156-240 [41287]
    Other proteins in same PDB: d1tbaa_
5. Domains for 1tbp:
  1. Domain d1tbpa1: 1tbp A:61-155 [41282]
  2. Domain d1tbpa2: 1tbp A:156-240 [41283]
  3. Domain d1tbpb1: 1tbp B:61-155 [41284]
  4. Domain d1tbpb2: 1tbp B:156-240 [41285]
6. Domains for 1ytb:
  1. Domain d1ytba1: 1ytb A:61-155 [41276]
    complexed with DNA containing TATA-box
    protein/DNA complex
  2. Domain d1ytba2: 1ytb A:156-240 [41277]
    complexed with DNA containing TATA-box
    protein/DNA complex
  3. Domain d1ytbb1: 1ytb B:61-155 [41278]
    complexed with DNA containing TATA-box
    protein/DNA complex
  4. Domain d1ytbb2: 1ytb B:156-240 [41279]
    complexed with DNA containing TATA-box
    protein/DNA complex
7. Domains for 1ytf:
  1. Domain d1ytfa1: 1ytf A:61-155 [41280]
    Other proteins in same PDB: d1ytfb_, d1ytfc_, d1ytfd1, d1ytfd2
    protein/DNA complex
  2. Domain d1ytfa2: 1ytf A:156-240 [41281]
    Other proteins in same PDB: d1ytfb_, d1ytfc_, d1ytfd1, d1ytfd2
    protein/DNA complex
Human (Homo sapiens) [TaxId:9606] [55948] (5 PDB entries)
1. Domains for 1c9b:
  1. Domain d1c9bb1: 1c9b B:158-252 [41216]
    Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
    protein/DNA complex
  2. Domain d1c9bb2: 1c9b B:253-337 [41217]
    Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
    protein/DNA complex
  3. Domain d1c9bf1: 1c9b F:158-252 [41218]
    Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
    protein/DNA complex
  4. Domain d1c9bf2: 1c9b F:253-337 [41219]
    Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
    protein/DNA complex
  5. Domain d1c9bj1: 1c9b J:158-252 [41220]
    Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
    protein/DNA complex
  6. Domain d1c9bj2: 1c9b J:253-337 [41221]
    Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
    protein/DNA complex
  7. Domain d1c9bn1: 1c9b N:158-252 [41222]
    Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
    protein/DNA complex
  8. Domain d1c9bn2: 1c9b N:253-337 [41223]
    Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
    protein/DNA complex
  9. Domain d1c9br1: 1c9b R:158-252 [41224]
    Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
    protein/DNA complex
  10. Domain d1c9br2: 1c9b R:253-337 [41225]
    Other proteins in same PDB: d1c9ba1, d1c9ba2, d1c9be1, d1c9be2, d1c9bi1, d1c9bi2, d1c9bm1, d1c9bm2, d1c9bq1, d1c9bq2
    protein/DNA complex
2. Domains for 1cdw:
  1. Domain d1cdwa1: 1cdw A:155-252 [41212]
    protein/DNA complex
  2. Domain d1cdwa2: 1cdw A:253-333 [41213]
    protein/DNA complex
3. Domains for 1jfi:
  1. Domain d1jfic1: 1jfi C:359-456 [62938]
    Other proteins in same PDB: d1jfia_, d1jfib_, d1jfic3
    protein/DNA complex
  2. Domain d1jfic2: 1jfi C:457-538 [62939]
    Other proteins in same PDB: d1jfia_, d1jfib_, d1jfic3
    protein/DNA complex
4. Domains for 1nvp:
  1. Domain d1nvpa1: 1nvp A:159-252 [92209]
    Other proteins in same PDB: d1nvpb_, d1nvpc_, d1nvpd1, d1nvpd2
    protein/DNA complex
  2. Domain d1nvpa2: 1nvp A:253-338 [92210]
    Other proteins in same PDB: d1nvpb_, d1nvpc_, d1nvpd1, d1nvpd2
    protein/DNA complex
5. Domains for 1tgh:
  1. Domain d1tgha1: 1tgh A:155-252 [41214]
    protein/DNA complex
  2. Domain d1tgha2: 1tgh A:253-334 [41215]
    protein/DNA complex
Pyrococcus woesei [TaxId:2262] [55951] (3 PDB entries)
1. Domains for 1ais:
  1. Domain d1aisa1: 1ais A:1-92 [41288]
    Other proteins in same PDB: d1aisb1, d1aisb2
    protein/DNA complex
  2. Domain d1aisa2: 1ais A:93-181 [41289]
    Other proteins in same PDB: d1aisb1, d1aisb2
    protein/DNA complex
2. Domains for 1d3u:
  1. Domain d1d3ua1: 1d3u A:1-92 [41290]
    Other proteins in same PDB: d1d3ub1, d1d3ub2
    protein/DNA complex
  2. Domain d1d3ua2: 1d3u A:93-181 [41291]
    Other proteins in same PDB: d1d3ub1, d1d3ub2
    protein/DNA complex
3. Domains for 1pcz:
  1. Domain d1pcza1: 1pcz A:2-92 [41292]
  2. Domain d1pcza2: 1pcz A:93-184 [41293]
  3. Domain d1pczb1: 1pcz B:2-92 [41294]
  4. Domain d1pczb2: 1pcz B:93-184 [41295]
Sulfolobus acidocaldarius [TaxId:2285] [103238] (1 PDB entry)
- Domains for 1mp9:
  1. Domain d1mp9a1: 1mp9 A:5-96 [91385]
  2. Domain d1mp9a2: 1mp9 A:97-197 [91386]
  3. Domain d1mp9b1: 1mp9 B:3-96 [91387]
  4. Domain d1mp9b2: 1mp9 B:97-191 [91388]
Thale cress (Arabidopsis thaliana) [TaxId:3702] [55949] (13 PDB entries)
1. Domains for 1qn3:
  1. Domain d1qn3a1: 1qn3 A:16-115 [41250]
  2. Domain d1qn3a2: 1qn3 A:116-198 [41251]
  3. Domain d1qn3b1: 1qn3 B:12-115 [41252]
  4. Domain d1qn3b2: 1qn3 B:116-198 [41253]
2. Domains for 1qn4:
  1. Domain d1qn4a1: 1qn4 A:16-115 [41238]
  2. Domain d1qn4a2: 1qn4 A:116-198 [41239]
  3. Domain d1qn4b1: 1qn4 B:12-115 [41240]
  4. Domain d1qn4b2: 1qn4 B:116-198 [41241]
3. Domains for 1qn5:
  1. Domain d1qn5a1: 1qn5 A:16-115 [41234]
  2. Domain d1qn5a2: 1qn5 A:116-198 [41235]
  3. Domain d1qn5b1: 1qn5 B:12-115 [41236]
  4. Domain d1qn5b2: 1qn5 B:116-197 [41237]
4. Domains for 1qn6:
  1. Domain d1qn6a1: 1qn6 A:15-115 [41254]
  2. Domain d1qn6a2: 1qn6 A:116-198 [41255]
  3. Domain d1qn6b1: 1qn6 B:12-115 [41256]
  4. Domain d1qn6b2: 1qn6 B:116-198 [41257]
5. Domains for 1qn7:
  1. Domain d1qn7a1: 1qn7 A:13-115 [41262]
  2. Domain d1qn7a2: 1qn7 A:116-198 [41263]
  3. Domain d1qn7b1: 1qn7 B:12-115 [41264]
  4. Domain d1qn7b2: 1qn7 B:116-197 [41265]
6. Domains for 1qn8:
  1. Domain d1qn8a1: 1qn8 A:16-115 [41258]
  2. Domain d1qn8a2: 1qn8 A:116-198 [41259]
  3. Domain d1qn8b1: 1qn8 B:12-115 [41260]
  4. Domain d1qn8b2: 1qn8 B:116-198 [41261]
7. Domains for 1qn9:
  1. Domain d1qn9a1: 1qn9 A:16-115 [41230]
  2. Domain d1qn9a2: 1qn9 A:116-198 [41231]
  3. Domain d1qn9b1: 1qn9 B:12-115 [41232]
  4. Domain d1qn9b2: 1qn9 B:116-197 [41233]
8. Domains for 1qna:
  1. Domain d1qnaa1: 1qna A:17-115 [41226]
  2. Domain d1qnaa2: 1qna A:116-198 [41227]
  3. Domain d1qnab1: 1qna B:12-115 [41228]
  4. Domain d1qnab2: 1qna B:116-197 [41229]
9. Domains for 1qnb:
  1. Domain d1qnba1: 1qnb A:16-115 [41266]
  2. Domain d1qnba2: 1qnb A:116-198 [41267]
  3. Domain d1qnbb1: 1qnb B:12-115 [41268]
  4. Domain d1qnbb2: 1qnb B:116-198 [41269]
10. Domains for 1qnc:
  1. Domain d1qnca1: 1qnc A:16-115 [41270]
  2. Domain d1qnca2: 1qnc A:116-198 [41271]
  3. Domain d1qncb1: 1qnc B:12-115 [41272]
  4. Domain d1qncb2: 1qnc B:116-198 [41273]
11. Domains for 1qne:
  1. Domain d1qnea1: 1qne A:12-115 [41246]
  2. Domain d1qnea2: 1qne A:116-198 [41247]
  3. Domain d1qneb1: 1qne B:11-115 [41248]
  4. Domain d1qneb2: 1qne B:116-198 [41249]
12. Domains for 1vok:
  1. Domain d1voka1: 1vok A:7-115 [41242]
    complexed with so4
  2. Domain d1voka2: 1vok A:116-198 [41243]
    complexed with so4
  3. Domain d1vokb1: 1vok B:12-115 [41244]
    complexed with so4
  4. Domain d1vokb2: 1vok B:116-199 [41245]
    complexed with so4
13. Domains for 1vol:
  1. Domain d1volb1: 1vol B:12-115 [41274]
    Other proteins in same PDB: d1vola1, d1vola2
    protein/DNA complex
  2. Domain d1volb2: 1vol B:116-198 [41275]
    Other proteins in same PDB: d1vola1, d1vola2
    protein/DNA complex

More info for Protein TATA-box binding protein (TBP), C-terminal domain from d.129.1.1: TATA-box binding protein (TBP), C-terminal domain

Timeline for Protein TATA-box binding protein (TBP), C-terminal domain from d.129.1.1: TATA-box binding protein (TBP), C-terminal domain:

Protein TATA-box binding protein (TBP), C-terminal domain from d.129.1.1: TATA-box binding protein (TBP), C-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein TATA-box binding protein (TBP), C-terminal domain from d.129.1.1: TATA-box binding protein (TBP), C-terminal domain appears in SCOPe 2.07