SCOPe 2.05: Protein: Metalloprotease

Lineage for Protein: Metalloprotease

Root: SCOPe 2.05
Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
Fold d.92: Zincin-like [55485] (2 superfamilies)
contains mixed beta sheet with connection over free side of the sheet
Superfamily d.92.1: Metalloproteases ("zincins"), catalytic domain [55486] (18 families)
Family d.92.1.6: Serralysin-like metalloprotease, catalytic (N-terminal) domain [55508] (2 proteins)
characteristic HEXXHXXGXXH motif and Met located near C-terminus
Protein Metalloprotease [55509] (4 species)
the rest of protein is all-beta sandwich containing a parallel beta-helix

Species:

Erwinia chrysanthemi [TaxId:556] [82735] (9 PDB entries)
Protease C
1. Domain for 1go7:
  - Domain d1go7p2: 1go7 P:18-258 [76246]
    Other proteins in same PDB: d1go7p1
    complexed with ca, po4, zn; mutant
2. Domain for 1go8:
  - Domain d1go8p2: 1go8 P:20-258 [76248]
    Other proteins in same PDB: d1go8p1
    complexed with ca, po4, zn; mutant
3. Domain for 1k7g:
  - Domain d1k7ga2: 1k7g A:25-258 [77280]
    Other proteins in same PDB: d1k7ga1
    complexed with ca, po4, zn
4. Domain for 1k7i:
  - Domain d1k7ia2: 1k7i A:18-258 [77282]
    Other proteins in same PDB: d1k7ia1
    complexed with ca, zn; mutant
5. Domain for 1k7q:
  - Domain d1k7qa2: 1k7q A:18-258 [77284]
    Other proteins in same PDB: d1k7qa1
    complexed with ca, zn; mutant
6. Domain for 3hb2:
  - Domain d3hb2p1: 3hb2 P:18-258 [210958]
    Other proteins in same PDB: d3hb2p2
    automated match to d1af0a2
    complexed with ca, cl, zn; mutant
7. Domain for 3hbu:
  - Domain d3hbup1: 3hbu P:18-258 [210988]
    Other proteins in same PDB: d3hbup2
    automated match to d1af0a2
    complexed with ca, cl, zn; mutant
8. Domain for 3hbv:
  - Domain d3hbvp2: 3hbv P:61-258 [239338]
    Other proteins in same PDB: d3hbvp1
    complexed with ca, cl, zn; mutant
9. Domain for 3hda:
  - Domain d3hdap2: 3hda P:61-258 [239339]
    Other proteins in same PDB: d3hdap1
    complexed with ca, cl; mutant
Pseudomonas aeruginosa [TaxId:287] [55510] (3 PDB entries)
alkaline protease
1. Domain for 1akl:
  - Domain d1akla2: 1akl A:1-246 [40299]
    Other proteins in same PDB: d1akla1
    complexed with ca, zn
2. Domain for 1jiw:
  - Domain d1jiwp2: 1jiw P:1-246 [63080]
    Other proteins in same PDB: d1jiwi_, d1jiwp1
    complexed with ca, zn
3. Domain for 1kap:
  - Domain d1kapp2: 1kap P:1-246 [40298]
    Other proteins in same PDB: d1kapp1
    complexed with ca, zn
Pseudomonas sp., tac ii 18 [TaxId:306] [82736] (8 PDB entries)
psychrophilic alkaline protease
1. Domain for 1g9k:
  - Domain d1g9ka2: 1g9k A:3-244 [76218]
    Other proteins in same PDB: d1g9ka1
    complexed with ca, so4, zn
2. Domain for 1h71:
  - Domain d1h71p2: 1h71 P:3-244 [76705]
    Other proteins in same PDB: d1h71p1
    complexed with ca, zn
3. Domain for 1o0q:
  - Domain d1o0qa2: 1o0q A:3-244 [86537]
    Other proteins in same PDB: d1o0qa1
    complexed with ca, so4
4. Domain for 1o0t:
  - Domain d1o0ta2: 1o0t A:3-244 [86545]
    Other proteins in same PDB: d1o0ta1
    complexed with ca, so4
5. Domain for 1om6:
  - Domain d1om6a2: 1om6 A:3-244 [87072]
    Other proteins in same PDB: d1om6a1
    complexed with ca, so4
6. Domain for 1om7:
  - Domain d1om7a2: 1om7 A:3-244 [87074]
    Other proteins in same PDB: d1om7a1
    complexed with ca, so4
7. Domain for 1om8:
  - Domain d1om8a2: 1om8 A:3-244 [87076]
    Other proteins in same PDB: d1om8a1
    complexed with ca, so4
8. Domain for 1omj:
  - Domain d1omja2: 1omj A:3-244 [87084]
    Other proteins in same PDB: d1omja1
    complexed with ca, so4, zn
Serratia marcescens [TaxId:615] [55511] (4 PDB entries)
Serralysin
1. Domain for 1af0:
  - Domain d1af0a2: 1af0 A:2-246 [40301]
    Other proteins in same PDB: d1af0a1
    complexed with 0z9, ca, zn
2. Domain for 1sat:
  - Domain d1sata2: 1sat A:4-246 [40300]
    Other proteins in same PDB: d1sata1
    complexed with ca, zn
3. Domain for 1smp:
  - Domain d1smpa2: 1smp A:4-246 [40303]
    Other proteins in same PDB: d1smpa1, d1smpi_
    complexed with ca, zn
4. Domain for 1srp:
  - Domain d1srpa2: 1srp A:4-246 [40302]
    Other proteins in same PDB: d1srpa1
    complexed with ca, zn

More info for Protein Metalloprotease from d.92.1.6: Serralysin-like metalloprotease, catalytic (N-terminal) domain

Timeline for Protein Metalloprotease from d.92.1.6: Serralysin-like metalloprotease, catalytic (N-terminal) domain:

Protein Metalloprotease from d.92.1.6: Serralysin-like metalloprotease, catalytic (N-terminal) domain first appeared (with stable ids) in SCOP 1.55, called Protein Metallo protease, catalytic (N-terminal) domain from d.92.1.6: Metallo protease, catalytic (N-terminal) domain
Protein Metalloprotease from d.92.1.6: Serralysin-like metalloprotease, catalytic (N-terminal) domain appears in SCOPe 2.04
Protein Metalloprotease from d.92.1.6: Serralysin-like metalloprotease, catalytic (N-terminal) domain appears in SCOPe 2.06
Protein Metalloprotease from d.92.1.6: Serralysin-like metalloprotease, catalytic (N-terminal) domain appears in the current release, SCOPe 2.08