SCOPe 2.08: Protein: Elongation factor G (EF-G)

Lineage for Protein: Elongation factor G (EF-G)

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.58: Ferredoxin-like [54861] (62 superfamilies)
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
Superfamily d.58.11: EF-G C-terminal domain-like [54980] (4 families)
Family d.58.11.1: EF-G/eEF-2 domains III and V [54981] (5 proteins)
domain III structure is lacking some of the superfamily characters and is often disordered in crystals
Protein Elongation factor G (EF-G) [54982] (2 species)
domain III is seen in 1FNM but disordered in the most of other PDB entries

Species:

Thermus thermophilus [TaxId:274] [54983] (9 PDB entries)

Domain for 1dar:
- Domain d1dara4: 1dar A:600-689 [39300]
  Other proteins in same PDB: d1dara1, d1dara2, d1dara3
  complexed with gdp
Domain for 1efg:
- Domain d1efga4: 1efg A:600-689 [39305]
  Other proteins in same PDB: d1efga1, d1efga2, d1efga3
  complexed with gdp
Domain for 1elo:
- Domain d1eloa4: 1elo A:600-689 [39304]
  Other proteins in same PDB: d1eloa1, d1eloa2, d1eloa3
Domains for 1fnm:
1. Domain d1fnma4: 1fnm A:404-482 [39302]
  Other proteins in same PDB: d1fnma1, d1fnma2, d1fnma3
  complexed with gdp, mg
2. Domain d1fnma5: 1fnm A:600-688 [39303]
  Other proteins in same PDB: d1fnma1, d1fnma2, d1fnma3
  complexed with gdp, mg
Domains for 1ktv:
1. Domain d1ktva4: 1ktv A:600-689 [91030]
  Other proteins in same PDB: d1ktva1, d1ktva2, d1ktva3, d1ktvb1, d1ktvb2, d1ktvb3
2. Domain d1ktvb4: 1ktv B:600-689 [91034]
  Other proteins in same PDB: d1ktva1, d1ktva2, d1ktva3, d1ktvb1, d1ktvb2, d1ktvb3
Domains for 2bm0:
1. Domain d2bm0a4: 2bm0 A:404-478 [128751]
  Other proteins in same PDB: d2bm0a1, d2bm0a2, d2bm0a3
  automatically matched to d1fnma4
  complexed with gdp, mg; mutant
2. Domain d2bm0a5: 2bm0 A:600-689 [128752]
  Other proteins in same PDB: d2bm0a1, d2bm0a2, d2bm0a3
  automatically matched to d1dar_4
  complexed with gdp, mg; mutant
Domains for 2bm1:
1. Domain d2bm1a4: 2bm1 A:404-478 [128756]
  Other proteins in same PDB: d2bm1a1, d2bm1a2, d2bm1a3
  automatically matched to d1fnma4
  complexed with gdp, mg; mutant
2. Domain d2bm1a5: 2bm1 A:600-688 [128757]
  Other proteins in same PDB: d2bm1a1, d2bm1a2, d2bm1a3
  automatically matched to d1dar_4
  complexed with gdp, mg; mutant

Domains for 2bv3:

Domain d2bv3a4: 2bv3 A:404-478 [129240]
Other proteins in same PDB: d2bv3a1, d2bv3a2, d2bv3a3
automatically matched to d1fnma4
complexed with gnp, mg; mutant
fragment; missing more than one-third of the common structure and/or sequence

Domain d2bv3a5: 2bv3 A:600-688 [129241]
Other proteins in same PDB: d2bv3a1, d2bv3a2, d2bv3a3
automatically matched to d1dar_4
complexed with gnp, mg; mutant

Domain for 2efg:
- Domain d2efga4: 2efg A:600-689 [39301]
  Other proteins in same PDB: d2efga1, d2efga2, d2efga3
  complexed with gdp

Thermus thermophilus, EF-G-2 [TaxId:274] [143371] (2 PDB entries)
Uniprot Q5SI76 371-447! Uniprot Q5SI76 563-658
TTHA1498
1. Domains for 1wdt:
  1. Domain d1wdta4: 1wdt A:570-665 [120914]
    Other proteins in same PDB: d1wdta1, d1wdta2, d1wdta3, d1wdta6
    complexed with gtp, mg
  2. Domain d1wdta5: 1wdt A:378-454 [120915]
    Other proteins in same PDB: d1wdta1, d1wdta2, d1wdta3, d1wdta6
    complexed with gtp, mg
2. Domains for 2dy1:
  1. Domain d2dy1a4: 2dy1 A:378-454 [146610]
    Other proteins in same PDB: d2dy1a1, d2dy1a2, d2dy1a3, d2dy1a6
    automated match to d1wdta5
    complexed with gtp, mg
  2. Domain d2dy1a5: 2dy1 A:570-665 [146611]
    Other proteins in same PDB: d2dy1a1, d2dy1a2, d2dy1a3, d2dy1a6
    automated match to d1wdta4
    complexed with gtp, mg

More info for Protein Elongation factor G (EF-G) from d.58.11.1: EF-G/eEF-2 domains III and V

Timeline for Protein Elongation factor G (EF-G) from d.58.11.1: EF-G/eEF-2 domains III and V:

Protein Elongation factor G (EF-G) from d.58.11.1: EF-G/eEF-2 domains III and V first appeared (with stable ids) in SCOP 1.55, called Protein Elongation factor G (EF-G), domains III and V from d.58.11.1: Elongation factor G (EF-G), domains III and V
Protein Elongation factor G (EF-G) from d.58.11.1: EF-G/eEF-2 domains III and V appears in SCOPe 2.07