Lineage for Family d.58.7.1: Canonical RBD

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1906287Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 1908438Superfamily d.58.7: RNA-binding domain, RBD [54928] (6 families) (S)
  5. 1908439Family d.58.7.1: Canonical RBD [54929] (68 proteins)

Proteins:

  1. 1908440Alkylation repair AlkB homolog 8, ALKBH8 [143334] (1 species)
  2. 1908443APOBEC1 stimulating protein [143326] (1 species)
  3. 1908446Arginine/serine-rich splicing factor 10 [143312] (1 species)
  4. 1908449Ataxin-2-binding protein 1 [143292] (1 species)
  5. 1908452Calcipressin-1 [117953] (1 species)
  6. 1908455CBP20, 20KDa nuclear cap-binding protein [64274] (1 species)
  7. 1908467Cleavage stimulation factor, 64 kda subunit [102983] (1 species)
  8. 1908470Cold-inducible RNA-binding protein [143300] (1 species)
  9. 1908473CUG triplet repeat RNA-binding protein 1 [143336] (1 species)
  10. 1908477E3 ubiquitin protein ligase CNOT4 [143294] (1 species)
    CCR4-NOT transcription complex subunit 4
  11. 1908480Eukaryotic translation initiation factor 3 subunit 4 [143304] (1 species)
  12. 1908483Eukaryotic translation initiation factor 4B [117973] (1 species)
  13. 1908486Heterogeneous nuclear ribonucleoprotein d0 [54944] (1 species)
  14. 1908490Heterogeneous nuclear ribonucleoprotein H' [117955] (1 species)
  15. 1908494Heterogeneous nuclear ribonucleoprotein L-like [117951] (1 species)
  16. 1908497Heterogeneous nuclear ribonucleoproteins A2/B1 [143342] (1 species)
  17. 1908500Heterogeneous nuclear ribonucleoproteins C1/C2 [117961] (1 species)
  18. 1908503HIV Tat-specific factor 1 [143290] (1 species)
  19. 1908506Hu antigen C (Huc) [54940] (1 species)
  20. 1908512Hu antigen D (Hud) [54942] (1 species)
  21. 1908518Hypothetical protein FLJ20273 [143328] (1 species)
  22. 1908521IGF-II mRNA-binding protein 2 isoform A [143344] (1 species)
  23. 1908524Limkain-b1, LKAP [143324] (1 species)
    KIAA0430
  24. 1908527Lupus LA protein [89940] (1 species)
  25. 1908542Matrin 3 [143306] (1 species)
  26. 1908546Musashi-1 [102981] (1 species)
  27. 1908549Negative elongation factor E, NELF-E [143302] (1 species)
  28. 1908554Neural RNA-binding protein Musashi-1 [54946] (1 species)
  29. 1908558Non-POU domain-containing octamer-binding protein, NonO [143354] (1 species)
  30. 1908562Nuclear factor Aly [102979] (1 species)
  31. 1908565Nuclear ribonucleoprotein A1 (RNP A1, UP1) [54930] (1 species)
    duplication: contains two domains of this fold
  32. Nuclear ribonucleoprotein D0 (AUF1) [75439] (1 species)
  33. 1908598Nucleolin [54952] (2 species)
    1. 1908599Species Golden hamster (Mesocricetus auratus) [TaxId:10036] [54953] (4 PDB entries)
    2. 1908606Species Human (Homo sapiens) [TaxId:9606] [255371] (1 PDB entry)
  34. 1908609Nucleolysin TIAR [143298] (1 species)
  35. 1908614Nucleoporin 35 [143330] (1 species)
  36. 1908620Peptidyl-prolyl cis-trans isomerase E, N-terminal domain [143310] (1 species)
  37. 1908623Poly(A)-binding protein [54948] (1 species)
  38. 1908641Poly(A)-specific ribonuclease PARN [117967] (1 species)
  39. 1908644Polypyrimidine tract-binding protein [54950] (1 species)
  40. 1908656Polypyrimidine tract-binding protein 2, PTBP2 [143332] (1 species)
  41. 1908659Pre-mRNA branch site protein p14 [143316] (1 species)
  42. 1908665Probable RNA-binding protein 19, Rbm19 [117969] (1 species)
  43. 1908671Probable RNA-binding protein KIAA1579 [117963] (1 species)
  44. 1908674Putative RNA-binding protein 15B, Rbm15b [117971] (1 species)
  45. 1908677Ribonucleoprotein PTB-binding 1, Raver-1 [143308] (1 species)
  46. 1908680RNA binding protein 23 [143352] (1 species)
  47. 1908684RNA-binding motif, single-stranded-interacting protein 1, RBMS1 [143356] (1 species)
  48. 1908687RNA-binding motif, single-stranded-interacting protein 2, RBMS2 [143320] (1 species)
  49. 1908690RNA-binding protein 12 [143349] (2 species)
    3rd RBD
    1. 1908691Species Human (Homo sapiens) [TaxId:9606] [143350] (3 PDB entries)
      Uniprot Q9NTZ6 412-523! Uniprot Q9NTZ6 536-638
    2. 1908695Species Mouse (Mus musculus) [TaxId:10090] [143351] (1 PDB entry)
      Uniprot Q8R4X3 917-1002
  50. 1908697RNA-binding protein 28 [143358] (1 species)
  51. 1908700RNA-binding protein 41, RBM41 [143296] (1 species)
  52. 1908703RNA-binding protein 8 [89938] (2 species)
    1. 1908704Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [89939] (3 PDB entries)
      CG8781 protein
    2. 1908709Species Human (Homo sapiens) [TaxId:9606] [102978] (3 PDB entries)
      RBM8A, Y14
  53. 1908716RNA-binding protein 9 [143314] (1 species)
  54. 1908719RNA-binding protein EWS [143340] (1 species)
  55. 1908722RNA-binding protein Raly (Autoantigen p542) [117959] (1 species)
  56. 1908725RNA-binding protein UBP1 [143322] (1 species)
  57. 1908728RNA-binding region containing protein 1 [143360] (1 species)
  58. 1908731Sex-lethal protein [54938] (1 species)
  59. 1908745Splicesomal U1A protein [54932] (2 species)
    duplication: contains two domains of this fold
    1. 1908746Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [160313] (3 PDB entries)
      Uniprot P43332 1-104! Uniprot P43332 134-216
    2. 1908750Species Human (Homo sapiens) [TaxId:9606] [54933] (48 PDB entries)
      Uniprot P09012 1-97 ! Uniprot P09012 4-98 ! Uniprot P09012 1-98
  60. 1908824Splicing factor 3B subunit 4 [143318] (1 species)
  61. 1908828Splicing factor U2AF 65 KDa subunit [54936] (2 species)
    1. 1908829Species Human (Homo sapiens) [TaxId:9606] [54937] (7 PDB entries)
    2. 1908838Species Mouse (Mus musculus) [TaxId:10090] [256391] (2 PDB entries)
  62. 1908842Splicing factor U2B'' [54934] (1 species)
  63. 1908846Splicing factor, arginine/serine-rich 1, SFRS1 [143346] (2 species)
    1. 1908847Species Human (Homo sapiens) [TaxId:9606] [143347] (3 PDB entries)
      Uniprot Q07955 1-95
    2. 1908851Species Mouse (Mus musculus) [TaxId:10090] [143348] (1 PDB entry)
      Uniprot Q6PDM2 112-206
  64. 1908853Splicing factor, arginine/serine-rich 9 (SFRS9) [117965] (1 species)
  65. 1908856Synaptojanin 2 [102985] (1 species)
  66. 1908859TAR DNA-binding protein 43, TDP-43 [117957] (1 species)
  67. 1908863U4/U6 snRNA-associated-splicing factor PRP24 [143338] (1 species)
    contains three RBDs
  68. 1908891automated matches [190332] (4 species)
    not a true protein
    1. 1908892Species Human (Homo sapiens) [TaxId:9606] [187155] (24 PDB entries)
    2. 1908949Species Mouse (Mus musculus) [TaxId:10090] [188825] (3 PDB entries)
    3. 1908954Species Nematode (Caenorhabditis elegans) [TaxId:6239] [258944] (3 PDB entries)
    4. 1908958Species Rattus norvegicus [TaxId:10116] [272203] (1 PDB entry)

More info for Family d.58.7.1: Canonical RBD

Timeline for Family d.58.7.1: Canonical RBD: