Lineage for Family d.58.7.1: Canonical RBD

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1413688Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 1415602Superfamily d.58.7: RNA-binding domain, RBD [54928] (6 families) (S)
  5. 1415603Family d.58.7.1: Canonical RBD [54929] (68 proteins)

Proteins:

  1. 1415604Alkylation repair AlkB homolog 8, ALKBH8 [143334] (1 species)
  2. 1415607APOBEC1 stimulating protein [143326] (1 species)
  3. 1415610Arginine/serine-rich splicing factor 10 [143312] (1 species)
  4. 1415613Ataxin-2-binding protein 1 [143292] (1 species)
  5. 1415616Calcipressin-1 [117953] (1 species)
  6. 1415619CBP20, 20KDa nuclear cap-binding protein [64274] (1 species)
  7. 1415631Cleavage stimulation factor, 64 kda subunit [102983] (1 species)
  8. 1415634Cold-inducible RNA-binding protein [143300] (1 species)
  9. 1415637CUG triplet repeat RNA-binding protein 1 [143336] (1 species)
  10. 1415640E3 ubiquitin protein ligase CNOT4 [143294] (1 species)
    CCR4-NOT transcription complex subunit 4
  11. 1415643Eukaryotic translation initiation factor 3 subunit 4 [143304] (1 species)
  12. 1415646Eukaryotic translation initiation factor 4B [117973] (1 species)
  13. 1415649Heterogeneous nuclear ribonucleoprotein d0 [54944] (1 species)
  14. 1415653Heterogeneous nuclear ribonucleoprotein H' [117955] (1 species)
  15. 1415657Heterogeneous nuclear ribonucleoprotein L-like [117951] (1 species)
  16. 1415660Heterogeneous nuclear ribonucleoproteins A2/B1 [143342] (1 species)
  17. 1415663Heterogeneous nuclear ribonucleoproteins C1/C2 [117961] (1 species)
  18. 1415666HIV Tat-specific factor 1 [143290] (1 species)
  19. 1415669Hu antigen C (Huc) [54940] (1 species)
  20. 1415675Hu antigen D (Hud) [54942] (1 species)
  21. 1415681Hypothetical protein FLJ20273 [143328] (1 species)
  22. 1415684IGF-II mRNA-binding protein 2 isoform A [143344] (1 species)
  23. 1415687Limkain-b1, LKAP [143324] (1 species)
    KIAA0430
  24. 1415690Lupus LA protein [89940] (1 species)
  25. 1415705Matrin 3 [143306] (1 species)
  26. 1415709Musashi-1 [102981] (1 species)
  27. 1415712Negative elongation factor E, NELF-E [143302] (1 species)
  28. 1415717Neural RNA-binding protein Musashi-1 [54946] (1 species)
  29. 1415721Non-POU domain-containing octamer-binding protein, NonO [143354] (1 species)
  30. 1415724Nuclear factor Aly [102979] (1 species)
  31. 1415727Nuclear ribonucleoprotein A1 (RNP A1, UP1) [54930] (1 species)
    duplication: contains two domains of this fold
  32. 1415757Nuclear ribonucleoprotein D0 (AUF1) [75439] (1 species)
  33. 1415762Nucleolin [54952] (1 species)
  34. 1415770Nucleolysin TIAR [143298] (1 species)
  35. 1415774Nucleoporin 35 [143330] (1 species)
  36. 1415780Peptidyl-prolyl cis-trans isomerase E, N-terminal domain [143310] (1 species)
  37. 1415783Poly(A)-binding protein [54948] (1 species)
  38. 1415801Poly(A)-specific ribonuclease PARN [117967] (1 species)
  39. 1415804Polypyrimidine tract-binding protein [54950] (1 species)
  40. 1415816Polypyrimidine tract-binding protein 2, PTBP2 [143332] (1 species)
  41. 1415819Pre-mRNA branch site protein p14 [143316] (1 species)
  42. 1415825Probable RNA-binding protein 19, Rbm19 [117969] (1 species)
  43. 1415831Probable RNA-binding protein KIAA1579 [117963] (1 species)
  44. 1415834Putative RNA-binding protein 15B, Rbm15b [117971] (1 species)
  45. 1415837Ribonucleoprotein PTB-binding 1, Raver-1 [143308] (1 species)
  46. 1415840RNA binding protein 23 [143352] (1 species)
  47. 1415843RNA-binding motif, single-stranded-interacting protein 1, RBMS1 [143356] (1 species)
  48. 1415846RNA-binding motif, single-stranded-interacting protein 2, RBMS2 [143320] (1 species)
  49. 1415849RNA-binding protein 12 [143349] (2 species)
    3rd RBD
    1. 1415850Species Human (Homo sapiens) [TaxId:9606] [143350] (2 PDB entries)
      Uniprot Q9NTZ6 412-523! Uniprot Q9NTZ6 536-638
    2. 1415853Species Mouse (Mus musculus) [TaxId:10090] [143351] (1 PDB entry)
      Uniprot Q8R4X3 917-1002
  50. 1415855RNA-binding protein 28 [143358] (1 species)
  51. 1415858RNA-binding protein 41, RBM41 [143296] (1 species)
  52. 1415861RNA-binding protein 8 [89938] (2 species)
    1. 1415862Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [89939] (3 PDB entries)
      CG8781 protein
    2. 1415867Species Human (Homo sapiens) [TaxId:9606] [102978] (3 PDB entries)
      RBM8A, Y14
  53. 1415874RNA-binding protein 9 [143314] (1 species)
  54. 1415877RNA-binding protein EWS [143340] (1 species)
  55. 1415880RNA-binding protein Raly (Autoantigen p542) [117959] (1 species)
  56. 1415883RNA-binding protein UBP1 [143322] (1 species)
  57. 1415886RNA-binding region containing protein 1 [143360] (1 species)
  58. 1415889Sex-lethal protein [54938] (1 species)
  59. 1415903Splicesomal U1A protein [54932] (2 species)
    duplication: contains two domains of this fold
    1. 1415904Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [160313] (3 PDB entries)
      Uniprot P43332 1-104! Uniprot P43332 134-216
    2. 1415908Species Human (Homo sapiens) [TaxId:9606] [54933] (43 PDB entries)
      Uniprot P09012 1-97 ! Uniprot P09012 4-98 ! Uniprot P09012 1-98
  60. 1415973Splicing factor 3B subunit 4 [143318] (1 species)
  61. 1415977Splicing factor U2AF 65 KDa subunit [54936] (1 species)
  62. 1415986Splicing factor U2B'' [54934] (1 species)
  63. 1415990Splicing factor, arginine/serine-rich 1, SFRS1 [143346] (2 species)
    1. 1415991Species Human (Homo sapiens) [TaxId:9606] [143347] (3 PDB entries)
      Uniprot Q07955 1-95
    2. 1415995Species Mouse (Mus musculus) [TaxId:10090] [143348] (1 PDB entry)
      Uniprot Q6PDM2 112-206
  64. 1415997Splicing factor, arginine/serine-rich 9 (SFRS9) [117965] (1 species)
  65. 1416000Synaptojanin 2 [102985] (1 species)
  66. 1416003TAR DNA-binding protein 43, TDP-43 [117957] (1 species)
  67. 1416007U4/U6 snRNA-associated-splicing factor PRP24 [143338] (1 species)
    contains three RBDs
  68. 1416033automated matches [190332] (2 species)
    not a true protein
    1. 1416034Species Human (Homo sapiens) [TaxId:9606] [187155] (13 PDB entries)
    2. 1416081Species Mouse (Mus musculus) [TaxId:10090] [188825] (2 PDB entries)

More info for Family d.58.7.1: Canonical RBD

Timeline for Family d.58.7.1: Canonical RBD: