SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: PII (product of glnB)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2173456Superfamily d.58.5: GlnB-like [54913] (6 families) (S)
    form timeric structures with the orthogonally packed beta-sheets
  5. 2173457Family d.58.5.1: Prokaryotic signal transducing protein [54914] (4 protein domains)
  6. 2173463Protein PII (product of glnB) [54915] (8 species)
    trimer with orthogonal packing of beta-sheets around the threefold axis

Species:

  1. 2173464Aquifex aeolicus [TaxId:63363] [188357] (3 PDB entries)
    1. Domain for 2eg1:
    2. Domain for 2eg2:
    3. Domains for 2z0g:
      1. 2173467Domain d2z0ga_: 2z0g A: [170952]
        automated match to d1pila_
        complexed with cl, po4
      2. 2173468Domain d2z0gb_: 2z0g B: [170953]
        automated match to d1pila_
        complexed with cl, po4
      3. 2173469Domain d2z0gc_: 2z0g C: [170954]
        automated match to d1pila_
        complexed with cl, po4
      4. 2173470Domain d2z0gd_: 2z0g D: [170955]
        automated match to d1pila_
        complexed with cl, po4
  2. 2173471Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId:1131] [102970] (4 PDB entries)
    1. Domains for 1qy7:
      1. 2173473Domain d1qy7a_: 1qy7 A: [96575]
        complexed with ni, so4
      2. 2173474Domain d1qy7b_: 1qy7 B: [96576]
        complexed with ni, so4
      3. 2173475Domain d1qy7c_: 1qy7 C: [96577]
        complexed with ni, so4
    2. Domains for 2v5h:
      1. 2173479Domain d2v5hg_: 2v5h G: [168347]
        Other proteins in same PDB: d2v5ha_, d2v5hb_, d2v5hc_, d2v5hd_, d2v5he_, d2v5hf_
        automated match to d1qy7a_
        complexed with cl, gol, na, nlg
      2. 2173480Domain d2v5hh_: 2v5h H: [168348]
        Other proteins in same PDB: d2v5ha_, d2v5hb_, d2v5hc_, d2v5hd_, d2v5he_, d2v5hf_
        automated match to d1qy7a_
        complexed with cl, gol, na, nlg
      3. 2173481Domain d2v5hi_: 2v5h I: [168349]
        Other proteins in same PDB: d2v5ha_, d2v5hb_, d2v5hc_, d2v5hd_, d2v5he_, d2v5hf_
        automated match to d1qy7a_
        complexed with cl, gol, na, nlg
      4. 2173482Domain d2v5hj_: 2v5h J: [168350]
        Other proteins in same PDB: d2v5ha_, d2v5hb_, d2v5hc_, d2v5hd_, d2v5he_, d2v5hf_
        automated match to d1qy7a_
        complexed with cl, gol, na, nlg
      5. 2173483Domain d2v5hk_: 2v5h K: [168351]
        Other proteins in same PDB: d2v5ha_, d2v5hb_, d2v5hc_, d2v5hd_, d2v5he_, d2v5hf_
        automated match to d1qy7a_
        complexed with cl, gol, na, nlg
      6. 2173484Domain d2v5hl_: 2v5h L: [168352]
        Other proteins in same PDB: d2v5ha_, d2v5hb_, d2v5hc_, d2v5hd_, d2v5he_, d2v5hf_
        automated match to d1qy7a_
        complexed with cl, gol, na, nlg
    3. Domain for 4c3l:
    4. Domains for 4c3m:
      1. 2173476Domain d4c3ma_: 4c3m A: [236688]
        automated match to d2v5hg_
      2. 2173477Domain d4c3mb_: 4c3m B: [236687]
        automated match to d2v5hg_
      3. 2173478Domain d4c3mc_: 4c3m C: [236689]
        automated match to d2v5hg_
  3. 2173485Cyanobacteria (Synechococcus sp.) pcc pcc 6803 [TaxId:1131] [102971] (1 PDB entry)
  4. 2173490Escherichia coli [TaxId:562] [54916] (2 PDB entries)
    1. Domain for 1pil:
    2. Domain for 2pii:
  5. 2173493Herbaspirillum seropedicae [TaxId:964] [89930] (1 PDB entry)
  6. 2173500Mycobacterium tuberculosis [TaxId:83332] [188403] (1 PDB entry)
  7. 2173502Thermus thermophilus [TaxId:274] [102972] (5 PDB entries)
    Uniprot P83820
    1. Domains for 1ufl:
      1. 2173515Domain d1ufla_: 1ufl A: [99341]
        structural genomics
      2. 2173516Domain d1uflb_: 1ufl B: [99342]
        structural genomics
      3. 2173517Domain d1uflc_: 1ufl C: [99343]
        structural genomics
    2. Domains for 1v3r:
      1. 2173506Domain d1v3ra_: 1v3r A: [113500]
        Structural genomics target
      2. 2173507Domain d1v3rb_: 1v3r B: [113501]
        Structural genomics target
      3. 2173508Domain d1v3rc_: 1v3r C: [113502]
        Structural genomics target
    3. Domains for 1v3s:
      1. 2173509Domain d1v3sa_: 1v3s A: [113503]
        Structural genomics target
        complexed with atp
      2. 2173510Domain d1v3sb_: 1v3s B: [113504]
        Structural genomics target
        complexed with atp
      3. 2173511Domain d1v3sc_: 1v3s C: [113505]
        Structural genomics target
        complexed with atp
    4. Domains for 1v9o:
      1. 2173512Domain d1v9oa_: 1v9o A: [113595]
        structural genomics target
        complexed with adp
      2. 2173513Domain d1v9ob_: 1v9o B: [113596]
        structural genomics target
        complexed with adp
      3. 2173514Domain d1v9oc_: 1v9o C: [113597]
        structural genomics target
        complexed with adp
    5. Domains for 1vfj:
      1. 2173503Domain d1vfja_: 1vfj A: [113637]
        structural genomics target
      2. 2173504Domain d1vfjb_: 1vfj B: [113638]
        structural genomics target
      3. 2173505Domain d1vfjc_: 1vfj C: [113639]
        structural genomics target
  8. 2289300Escherichia coli [TaxId:83333] [332601] (1 PDB entry)

More info for Protein PII (product of glnB) from d.58.5.1: Prokaryotic signal transducing protein

Timeline for Protein PII (product of glnB) from d.58.5.1: Prokaryotic signal transducing protein: