SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family d.58.5.1: Prokaryotic signal transducing protein

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2173456Superfamily d.58.5: GlnB-like [54913] (6 families) (S)
    form timeric structures with the orthogonally packed beta-sheets
  5. 2173457Family d.58.5.1: Prokaryotic signal transducing protein [54914] (4 protein domains)

Protein Domains:

  1. 2173458Hypothetical protein TTHA0516 [143281] (1 species)
  2. 2173463PII (product of glnB) [54915] (8 species)
    trimer with orthogonal packing of beta-sheets around the threefold axis
    1. 2173464Species Aquifex aeolicus [TaxId:63363] [188357] (3 PDB entries)
    2. 2173471Species Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId:1131] [102970] (4 PDB entries)
    3. 2173485Species Cyanobacteria (Synechococcus sp.) pcc pcc 6803 [TaxId:1131] [102971] (1 PDB entry)
    4. 2173490Species Escherichia coli [TaxId:562] [54916] (2 PDB entries)
    5. 2173493Species Herbaspirillum seropedicae [TaxId:964] [89930] (1 PDB entry)
    6. 2173500Species Mycobacterium tuberculosis [TaxId:83332] [188403] (1 PDB entry)
    7. 2173502Species Thermus thermophilus [TaxId:274] [102972] (5 PDB entries)
      Uniprot P83820
    8. 2289300Species Escherichia coli [TaxId:83333] [332601] (1 PDB entry)
  3. 2173518PII-homolog GlnK [54917] (2 species)
    1. 2173519Species Escherichia coli [TaxId:562] [54918] (3 PDB entries)
    2. 2173529Species Shigella flexneri [TaxId:623] [160309] (1 PDB entry)
      Uniprot P0AC58 1-112
  4. 2173531automated matches [190670] (6 species)
    not a true protein
    1. 2173532Species Azospirillum brasilense [TaxId:192] [189362] (10 PDB entries)
    2. 2173556Species Mycobacterium tuberculosis [TaxId:1773] [189389] (1 PDB entry)
    3. 2173560Species Neisseria meningitidis [TaxId:122586] [187774] (1 PDB entry)
    4. 2173562Species Streptococcus mutans [TaxId:1309] [189585] (1 PDB entry)
    5. 2173569Species Synechococcus elongatus PCC 7942 [TaxId:1140] [189437] (4 PDB entries)
    6. 2173595Species Synechococcus elongatus [TaxId:32046] [189889] (2 PDB entries)

More info for Family d.58.5.1: Prokaryotic signal transducing protein

Timeline for Family d.58.5.1: Prokaryotic signal transducing protein: