SCOPe 2.07: Family d.22.1.1: Fluorescent proteins

Lineage for Family d.22.1.1: Fluorescent proteins

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.22: GFP-like [54510] (1 superfamily)
   beta-sheet folds into a barrel (n=11, S=14) around the central helix

4. Superfamily d.22.1: GFP-like [54511] (3 families)

5. Family d.22.1.1: Fluorescent proteins [54512] (6 proteins)

Proteins:

1. GFP-like non-fluorescent chromoprotein FP595 [117863] (1 species)

   • Species Sea anemone (Anemonia sulcata) [TaxId:6108] [117864] (1 PDB entry)
     Uniprot Q9GZ28 # 95% sequence identity

2. Green fluorescent protein, GFP [54513] (5 species)

   1. Species Clytia gregaria [TaxId:27801] [188531] (1 PDB entry)

   2. Species Galaxea fascicularis [TaxId:46745] [190027] (1 PDB entry)

   3. Species Jellyfish (Aequorea victoria) [TaxId:6100] [54514] (272 PDB entries)
      Uniprot P42212

   4. Species Nicotiana benthamiana [TaxId:4100] [383320] (1 PDB entry)

   5. Species Renilla reniformis [TaxId:6136] [160126] (2 PDB entries)
      Uniprot Q963I9 7-226

3. Pocilloporin pigment Rtms5 [89866] (1 species)

   • Species Coral (Montipora efflorescens) [TaxId:105610] [89867] (3 PDB entries)

4. Red fluorescent protein (fp583 or dsred(clontech)) [54515] (1 species)

   • Species Coral (Discosoma sp.) [TaxId:86600] [54516] (3 PDB entries)

5. Red fluorescent protein fp61 [102854] (1 species)

   • Species Sea anemone (Entacmaea quadricolor) [TaxId:6118] [102855] (1 PDB entry)

6. automated matches [190406] (22 species)
   not a true protein

   1. Species Aequorea coerulescens [TaxId:210840] [189267] (7 PDB entries)

   2. Species Aequorea macrodactyla [TaxId:147615] [399522] (1 PDB entry)

   3. Species Anaplasma marginale [TaxId:770] [277056] (3 PDB entries)

   4. Species Artificial gene [TaxId:32630] [189424] (7 PDB entries)

   5. Species Azotobacter vinelandii [TaxId:354] [188536] (1 PDB entry)

   6. Species Cfp marker [TaxId:141850] [276575] (1 PDB entry)

   7. Species Cnidopus japonicus [TaxId:380086] [188533] (2 PDB entries)

   8. Species Coral (Discosoma sp.) [TaxId:86600] [188539] (22 PDB entries)

   9. Species Coral (Montipora efflorescens) [TaxId:105610] [188535] (3 PDB entries)

   10. Species Dendronephthya sp. [TaxId:191210] [188919] (1 PDB entry)

   11. Species Discosoma sp. [TaxId:301246] [188540] (5 PDB entries)

   12. Species Discosoma striata [188537] (1 PDB entry)

   13. Species Enterovirus a71 [TaxId:39054] [364438] (1 PDB entry)

   14. Species Escherichia coli [TaxId:562] [317895] (2 PDB entries)

   15. Species Heteractis crispa [TaxId:175771] [188161] (2 PDB entries)

   16. Species Jellyfish (Aequorea victoria) [TaxId:6100] [188134] (63 PDB entries)

   17. Species Montipora sp. [TaxId:321802] [189025] (4 PDB entries)

   18. Species Recombinant vesicular stomatitis indiana virus rvsv-g/gfp [TaxId:582817] [407608] (1 PDB entry)

   19. Species Sea anemone (Anemonia sulcata) [TaxId:6108] [188527] (2 PDB entries)

   20. Species Sea anemone (Entacmaea quadricolor) [TaxId:6118] [188538] (23 PDB entries)

   21. Species Stichodactyla haddoni [TaxId:475174] [366510] (2 PDB entries)

   22. Species Vaccinia virus [TaxId:10245] [342120] (3 PDB entries)

More info for Family d.22.1.1: Fluorescent proteins

Timeline for Family d.22.1.1: Fluorescent proteins:

• Family d.22.1.1: Fluorescent proteins first appeared (with stable ids) in SCOP 1.55
  
• Family d.22.1.1: Fluorescent proteins appears in SCOPe 2.06
  
• Family d.22.1.1: Fluorescent proteins appears in the current release, SCOPe 2.08