Lineage for Protein: Ubiquitin conjugating enzyme, UBC

  1. Root: SCOPe 2.01
  2. 1013083Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1021591Fold d.20: UBC-like [54494] (1 superfamily)
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. 1021592Superfamily d.20.1: UBC-like [54495] (5 families) (S)
  5. 1021593Family d.20.1.1: UBC-related [54496] (7 proteins)
  6. 1021601Protein Ubiquitin conjugating enzyme, UBC [54497] (33 species)

Species:

  1. 1021602African clawed frog (Xenopus laevis) [TaxId:8355] [160080] (1 PDB entry)
  2. 1021604Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187672] (2 PDB entries)
    1. Domains for 2eke:
      1. 1021609Domain d2ekea_: 2eke A: [161413]
        Other proteins in same PDB: d2ekec1, d2eked1
        automated match to d1a3sa_
      2. 1021610Domain d2ekeb_: 2eke B: [161414]
        Other proteins in same PDB: d2ekec1, d2eked1
        automated match to d1a3sa_
    2. Domains for 2gjd:
      1. 1021605Domain d2gjda_: 2gjd A: [164730]
        automated match to d1a3sa_
      2. 1021606Domain d2gjdb_: 2gjd B: [164731]
        automated match to d1a3sa_
      3. 1021607Domain d2gjdc_: 2gjd C: [164732]
        automated match to d1a3sa_
      4. 1021608Domain d2gjdd_: 2gjd D: [164733]
        automated match to d1a3sa_
  3. 1021611Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId:4932] [64241] (2 PDB entries)
    1. Domain for 1jat:
    2. Domain for 2gmi:
  4. 1021614Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId:4932] [69685] (3 PDB entries)
    Uniprot P21734
    1. Domain for 1fxt:
    2. Domains for 1fzy:
      1. 1021615Domain d1fzya_: 1fzy A: [65072]
      2. 1021616Domain d1fzyb_: 1fzy B: [65073]
    3. Domain for 1tte:
  5. 1021619Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId:4932] [64239] (3 PDB entries)
    1. Domain for 1jat:
    2. Domains for 1jbb:
      1. 1021621Domain d1jbba_: 1jbb A: [62842]
      2. 1021622Domain d1jbbb_: 1jbb B: [62843]
    3. Domain for 2gmi:
  6. 1021624Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:4932] [54499] (1 PDB entry)
  7. 1021628Baker's yeast (Saccharomyces cerevisiae), ubc4 [TaxId:4932] [54500] (1 PDB entry)
  8. 1021630Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId:4932] [54501] (1 PDB entry)
  9. 1021632Caenorhabditis elegans, E2 2 [TaxId:6239] [143060] (1 PDB entry)
    Uniprot P35129 1-147
  10. 1021634Clam (Spisula solidissima), E-2C [TaxId:6584] [54504] (1 PDB entry)
  11. 1021636Human (Homo sapiens), E2 D3 [TaxId:9606] [143054] (2 PDB entries)
    Uniprot P61077 1-147
    1. Domain for 1x23:
    2. Domain for 2fuh:
  12. 1021639Human (Homo sapiens), E2 G1 [TaxId:9606] [143056] (1 PDB entry)
    Uniprot P62253 7-131
  13. 1021641Human (Homo sapiens), E2 H [TaxId:9606] [143055] (1 PDB entry)
    Uniprot P62256 4-155
  14. 1021644Human (Homo sapiens), E2 J2 [TaxId:9606] [143050] (1 PDB entry)
    Uniprot Q5T7L1 12-168
    ubc6 homologue
  15. 1021647Human (Homo sapiens), E2 L6 [TaxId:9606] [143052] (1 PDB entry)
    Uniprot O14933 2-151
  16. 1021649Human (Homo sapiens), E2 M [TaxId:9606] [143058] (2 PDB entries)
    Uniprot P61081 27-183
    the extra N-terminal peptide, bound to the heterodimeric E1 enzyme for NEDD8, can be seen in the PDB entry 1tt5, chains E and F
    1. Domain for 1y8x:
    2. Domain for 2nvu:
  17. 1021652Human (Homo sapiens), E2 S [TaxId:9606] [143048] (1 PDB entry)
    Uniprot Q16763 6-156
  18. 1021654Human (Homo sapiens), E2 T [TaxId:9606] [143057] (1 PDB entry)
    Uniprot Q9NPD8 1-154
    Hspc150
  19. 1021656Human (Homo sapiens), E2 U [TaxId:9606] [143053] (1 PDB entry)
    Uniprot Q5VVX9 1-148
  20. 1021658Human (Homo sapiens), E2 variant 1 [TaxId:9606] [143051] (2 PDB entries)
    Uniprot Q13404 80-221! Uniprot Q13404 82-220
    1. Domain for 2a4d:
    2. Domain for 2c2v:
  21. 1021661Human (Homo sapiens), mms2 [TaxId:9606] [64242] (3 PDB entries)
    1. Domain for 1j74:
    2. Domain for 1j7d:
    3. Domain for 1zgu:
  22. 1021665Human (Homo sapiens), ubc13 [TaxId:9606] [64240] (1 PDB entry)
  23. 1021667Human (Homo sapiens), ubc2b [TaxId:9606] [102840] (3 PDB entries)
    E2-17 kDa
    1. Domain for 1jas:
    2. Domain for 2yb6:
    3. Domain for 2ybf:
  24. 1021671Human (Homo sapiens), ubc9 [TaxId:9606] [54503] (20 PDB entries)
    identical sequence in many other species
    1. Domain for 1a3s:
    2. Domains for 1kps:
      1. 1021683Domain d1kpsa_: 1kps A: [68786]
        Other proteins in same PDB: d1kpsb_, d1kpsd_
        complexed with so4
      2. 1021684Domain d1kpsc_: 1kps C: [68788]
        Other proteins in same PDB: d1kpsb_, d1kpsd_
        complexed with so4
    3. Domain for 1u9a:
    4. Domain for 1u9b:
    5. Domain for 1z5s:
    6. Domain for 2grn:
    7. Domain for 2gro:
    8. Domain for 2grp:
    9. Domain for 2grq:
    10. Domain for 2grr:
    11. Domains for 2o25:
      1. 1021687Domain d2o25c_: 2o25 C: [138890]
        Other proteins in same PDB: d2o25a1, d2o25a2, d2o25b1, d2o25b2
        automated match to d1kpsa_
      2. 1021688Domain d2o25d_: 2o25 D: [138891]
        Other proteins in same PDB: d2o25a1, d2o25a2, d2o25b1, d2o25b2
        automated match to d1kpsa_
    12. Domain for 2pe6:
    13. Domain for 2px9:
    14. Domain for 2uyz:
    15. Domain for 2vrr:
    16. Domain for 2xwu:
    17. Domains for 3a4s:
      1. 1021690Domain d3a4sa_: 3a4s A: [171724]
        Other proteins in same PDB: d3a4sc_, d3a4sd_
        automated match to d1kpsa_
        protein/RNA complex
      2. 1021691Domain d3a4sb_: 3a4s B: [171725]
        Other proteins in same PDB: d3a4sc_, d3a4sd_
        automated match to d1kpsa_
        protein/RNA complex
    18. Domain for 3uin:
    19. Domain for 3uio:
    20. Domain for 3uip:
  25. 1021695Human (Homo sapiens), ubch10 [TaxId:9606] [64243] (1 PDB entry)
  26. 1021698Human (Homo sapiens), ubch5b [TaxId:9606] [102841] (10 PDB entries)
    Uniprot P62837
    E2-17 kDa 2
    1. Domain for 1ur6:
    2. Domain for 1w4u:
    3. Domain for 2esk:
    4. Domain for 2eso:
    5. Domain for 2esp:
    6. Domain for 2esq:
    7. Domain for 3l1y:
    8. Domain for 4a49:
    9. Domain for 4a4b:
    10. Domain for 4a4c:
  27. 1021709Human (Homo sapiens), ubch7 [TaxId:9606] [54502] (2 PDB entries)
    1. Domain for 1c4z:
    2. Domain for 1fbv:
  28. 1021712Human (Homo sapiens), ubch8 [TaxId:9606] [117850] (1 PDB entry)
    Uniprot Q96LR5 54-201
  29. 1021716Leishmania major [TaxId:5664] [143049] (1 PDB entry)
    Uniprot Q4Q5L3 9-166
    Ubiquitin carrier protein 4, putative
  30. 1021718Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId:6239] [89862] (1 PDB entry)
  31. 1021720Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:6239] [102842] (1 PDB entry)
  32. 1021724Thale cress (Arabidopsis thaliana) [TaxId:3702] [54498] (1 PDB entry)
  33. 1021726Toxoplasma gondii [TaxId:5811] [143059] (1 PDB entry)

More info for Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related

Timeline for Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related: