SCOPe 2.04: Family d.17.4.4: Ring hydroxylating beta subunit

Lineage for Family d.17.4.4: Ring hydroxylating beta subunit

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.17: Cystatin-like [54402] (7 superfamilies)
   Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet

4. Superfamily d.17.4: NTF2-like [54427] (31 families)
   has a beta-alpha(2)-beta insertion after the main helix

5. Family d.17.4.4: Ring hydroxylating beta subunit [54438] (7 proteins)
   Pfam PF00866

Proteins:

1. Benzoate 1,2-dioxygenase beta subunit BenB [159982] (1 species)

   • Species Burkholderia mallei [TaxId:13373] [159983] (1 PDB entry)
     Uniprot Q62E64 1-163

2. Biphenyl dioxygenase small subunit BphA2 [110824] (1 species)

   • Species Rhodococcus sp. RHA1 [TaxId:101510] [110825] (2 PDB entries)
     Uniprot Q53123 11-187

3. Naphthalene 1,2-dioxygenase beta subunit [54439] (4 species)

   1. Species Pseudomonas putida [TaxId:303] [54440] (10 PDB entries)

   2. Species Pseudomonas sp. [TaxId:306] [187132] (7 PDB entries)

   3. Species Pseudomonas sp. [TaxId:69011] [228596] (10 PDB entries)

   4. Species Rhodococcus sp. ncimb12038 [TaxId:92694] [142996] (1 PDB entry)
      Uniprot Q7BSK6 6-172

4. Nitrobenzene dioxygenase beta subunit, NBDO-beta [142999] (1 species)

   • Species Comamonas sp. JS765 [TaxId:58226] [143000] (1 PDB entry)
     Uniprot Q8RTL3 1-194

5. Putative hydroxylase subunit Saro3860 [159980] (1 species)

   • Species Novosphingobium aromaticivorans [TaxId:48935] [159981] (1 PDB entry)
     Uniprot A4XDU4 6-162

6. Small subunit of cumene dioxygenase CumA2 [142997] (1 species)

   • Species Pseudomonas fluorescens [TaxId:294] [142998] (1 PDB entry)
     Uniprot Q51744 6-186

7. automated matches [190223] (4 species)
   not a true protein

   1. Species Burkholderia xenovorans [TaxId:266265] [189543] (7 PDB entries)

   2. Species Comamonas sp. [TaxId:58226] [186984] (2 PDB entries)

   3. Species Comamonas testosteroni [TaxId:285] [189310] (2 PDB entries)

   4. Species Rhodococcus sp. [TaxId:92694] [255044] (1 PDB entry)

More info for Family d.17.4.4: Ring hydroxylating beta subunit

Timeline for Family d.17.4.4: Ring hydroxylating beta subunit:

• Family d.17.4.4: Ring hydroxylating beta subunit first appeared (with stable ids) in SCOP 1.55, called Family d.17.4.4: Naphthalene 1,2-dioxygenase beta subunit
  
• Family d.17.4.4: Ring hydroxylating beta subunit appears in SCOPe 2.03
  
• Family d.17.4.4: Ring hydroxylating beta subunit appears in SCOPe 2.05
  
• Family d.17.4.4: Ring hydroxylating beta subunit appears in the current release, SCOPe 2.08