SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family d.15.4.1: 2Fe-2S ferredoxin-related

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2158219Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2159798Superfamily d.15.4: 2Fe-2S ferredoxin-like [54292] (3 families) (S)
  5. 2159799Family d.15.4.1: 2Fe-2S ferredoxin-related [54293] (4 protein domains)

Protein Domains:

  1. 21598002Fe-2S ferredoxin [54294] (19 species)
    1. 2159801Species Anabaena sp., pcc 7119 and 7120 [TaxId:1167] [54295] (12 PDB entries)
    2. 2159820Species Aphanothece sacrum [TaxId:1122] [54297] (1 PDB entry)
    3. 2159825Species Chlorella fusca [TaxId:3073] [54300] (1 PDB entry)
    4. 2159827Species Equisetum arvense [TaxId:3258] [54301] (2 PDB entries)
      Uniprot P00237 # isoform II
    5. 2159831Species Haloarcula marismortui [TaxId:2238] [54302] (1 PDB entry)
    6. 2159833Species Halobacterium halobium [TaxId:2242] [64228] (2 PDB entries)
    7. 2159836Species Maize (Zea mays) [TaxId:4577] [54305] (5 PDB entries)
    8. 2159844Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [102799] (1 PDB entry)
    9. 2159847Species Parsley (Petroselinum crispum) [TaxId:4043] [54303] (1 PDB entry)
    10. 2159849Species Pseudomonas putida, putidaredoxin [TaxId:303] [54307] (19 PDB entries)
    11. 2159885Species Pseudomonas sp., terpredoxin [TaxId:306] [54309] (1 PDB entry)
    12. 2159887Species Rhodobacter capsulatus, ferredoxin VI [TaxId:1061] [64230] (2 PDB entries)
    13. 2159890Species Spinach (Spinacia oleracea) [TaxId:3562] [54304] (1 PDB entry)
    14. 2159892Species Spirulina platensis [TaxId:118562] [54296] (1 PDB entry)
    15. 2159894Species Synechococcus elongatus [TaxId:32046] [54299] (3 PDB entries)
    16. 2159898Species Synechocystis sp. PCC 6803 [TaxId:1148] [54298] (3 PDB entries)
    17. 2159902Species Synechocystis sp. [TaxId:1111708] [277072] (2 PDB entries)
    18. 2159905Species Thermosynechococcus elongatus [TaxId:197221] [277073] (1 PDB entry)
    19. 2159907Species Trichomonas vaginalis [TaxId:5722] [75365] (1 PDB entry)
  2. 2159911Adrenodoxin [54310] (1 species)
  3. 2159923Adrenodoxin-like ferredoxin [75366] (1 species)
  4. 2159928automated matches [190231] (9 species)
    not a true protein
    1. 2159929Species Anabaena sp. [311173] (2 PDB entries)
    2. 2159932Species Aphanothece sacrum [TaxId:1122] [189862] (1 PDB entry)
    3. 2159937Species Cow (Bos taurus) [TaxId:9913] [186995] (1 PDB entry)
    4. 2159940Species Cyanidioschyzon merolae [TaxId:45157] [189509] (2 PDB entries)
    5. 2159944Species Human (Homo sapiens) [TaxId:9606] [189528] (5 PDB entries)
    6. 2159961Species Leptolyngbya boryana [TaxId:1184] [195189] (1 PDB entry)
    7. 2159964Species Mastigocladus laminosus [TaxId:83541] [188017] (2 PDB entries)
    8. 2159969Species Synechocystis sp. [TaxId:1148] [255333] (1 PDB entry)
    9. 2285886Species Zea mays [TaxId:4577] [329187] (2 PDB entries)

More info for Family d.15.4.1: 2Fe-2S ferredoxin-related

Timeline for Family d.15.4.1: 2Fe-2S ferredoxin-related: