Lineage for Species: Human (Homo sapiens) [TaxId: 9606]

  1. Root: SCOP 1.73
  2. 713694Class d: Alpha and beta proteins (a+b) [53931] (334 folds)
  3. 717080Fold d.15: beta-Grasp (ubiquitin-like) [54235] (13 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 717081Superfamily d.15.1: Ubiquitin-like [54236] (7 families) (S)
  5. 717082Family d.15.1.1: Ubiquitin-related [54237] (38 proteins)
    Pfam PF00240
  6. 717214Protein Ubiquitin [54238] (3 species)
  7. 717220Species Human (Homo sapiens) [TaxId:9606] [54239] (47 PDB entries)
    identical sequence in many other species

PDB entries in Species: Human (Homo sapiens) [TaxId: 9606]:

  1. Domain(s) for 1aar:
    1. 717246Domain d1aara_: 1aar A: [37586]
    2. 717247Domain d1aarb_: 1aar B: [37587]
      di-ubiquitin
  2. Domain(s) for 1c3t:
  3. Domain(s) for 1d3z:
  4. Domain(s) for 1f9j:
    1. 717266Domain d1f9ja_: 1f9j A: [37590]
    2. 717267Domain d1f9jb_: 1f9j B: [37591]
      a new crystal form of tetraubiquitin
  5. Domain(s) for 1fxt:
  6. Domain(s) for 1g6j:
  7. Domain(s) for 1gjz:
    1. 717274Domain d1gjza_: 1gjz A: [65223]
    2. 717275Domain d1gjzb_: 1gjz B: [65224]
  8. Domain(s) for 1nbf:
    1. 717254Domain d1nbfc_: 1nbf C: [80389]
      Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_
    2. 717255Domain d1nbfd_: 1nbf D: [80390]
      Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_
      complex with USP7
      complexed with glz
  9. Domain(s) for 1ogw:
    • 717223Domain d1ogwa_: 1ogw A: [87001]
      synthetic protein with fluoro-Leu at 50 and 67
      complexed with lef
  10. Domain(s) for 1p3q:
    1. 717291Domain d1p3qu_: 1p3q U: [87750]
      Other proteins in same PDB: d1p3qq_, d1p3qr_
    2. 717292Domain d1p3qv_: 1p3q V: [87751]
      Other proteins in same PDB: d1p3qq_, d1p3qr_
      annotated as bovine in PDB, identical to human sequence
      complexed with mse; mutant
  11. Domain(s) for 1q5w:
  12. Domain(s) for 1s1q:
    1. 717234Domain d1s1qb_: 1s1q B: [98352]
      Other proteins in same PDB: d1s1qa_, d1s1qc_
    2. 717235Domain d1s1qd_: 1s1q D: [98354]
      Other proteins in same PDB: d1s1qa_, d1s1qc_
      complexed with acy, cu, so4
  13. Domain(s) for 1sif:
  14. Domain(s) for 1tbe:
    1. 717256Domain d1tbea_: 1tbe A: [37588]
    2. 717257Domain d1tbeb_: 1tbe B: [37589]
      tetra-ubiquitin
  15. Domain(s) for 1ubi:
  16. Domain(s) for 1ubq:
  17. Domain(s) for 1ud7:
  18. Domain(s) for 1uzx:
    • 717233Domain d1uzxb_: 1uzx B: [100239]
      Other proteins in same PDB: d1uzxa_
      annotated as bovine in PDB, identical to human sequence
      complexed with mes, mso, so4
  19. Domain(s) for 1v80:
  20. Domain(s) for 1v81:
  21. Domain(s) for 1wr6:
    1. 717261Domain d1wr6e1: 1wr6 E:1-72 [121186]
      automatically matched to d1aara_
    2. 717262Domain d1wr6f1: 1wr6 F:1-73 [121187]
      automatically matched to d1aara_
    3. 717263Domain d1wr6g1: 1wr6 G:1-72 [121188]
      automatically matched to d1aara_
    4. 717264Domain d1wr6h1: 1wr6 H:1-74 [121189]
      automatically matched to d1aara_
  22. Domain(s) for 1wrd:
  23. Domain(s) for 1xd3:
    1. 717221Domain d1xd3b_: 1xd3 B: [115146]
      Other proteins in same PDB: d1xd3a_, d1xd3c_
    2. 717222Domain d1xd3d_: 1xd3 D: [115148]
      Other proteins in same PDB: d1xd3a_, d1xd3c_
      complexed with gve, mg
  24. Domain(s) for 1xqq:
  25. Domain(s) for 1yd8:
    1. 717269Domain d1yd8u1: 1yd8 U:1-73 [122974]
      automatically matched to d1aara_
    2. 717270Domain d1yd8v1: 1yd8 V:1-73 [122975]
      automatically matched to d1aara_
  26. Domain(s) for 1yx5:
  27. Domain(s) for 1yx6:
  28. Domain(s) for 1zgu:
  29. Domain(s) for 2ayo:
  30. Domain(s) for 2bgf:
    1. 717277Domain d2bgfa1: 2bgf A:1-76 [128476]
      automatically matched to d1aara_
    2. 717278Domain d2bgfb1: 2bgf B:1-76 [128477]
      automatically matched to d1aara_
  31. Domain(s) for 2c7m:
  32. Domain(s) for 2c7n:
    1. 717238Domain d2c7nb1: 2c7n B:1-74 [130070]
      Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
      automatically matched to d1aara_
      complexed with zn
    2. 717239Domain d2c7nd1: 2c7n D:1-74 [130072]
      Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
      automatically matched to d1aara_
      complexed with zn
    3. 717240Domain d2c7nf1: 2c7n F:1-74 [130073]
      Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
      automatically matched to d1aara_
      complexed with zn
    4. 717241Domain d2c7nh1: 2c7n H:1-73 [130075]
      Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
      automatically matched to d1aara_
      complexed with zn
    5. 717242Domain d2c7nj1: 2c7n J:1-72 [130077]
      Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
      automatically matched to d1aara_
      complexed with zn
    6. 717243Domain d2c7nl1: 2c7n L:1-74 [130078]
      Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
      automatically matched to d1aara_
      complexed with zn
  33. Domain(s) for 2d3g:
    1. 717224Domain d2d3ga1: 2d3g A:1-72 [131206]
      automatically matched to d1aara_
    2. 717225Domain d2d3gb1: 2d3g B:1-72 [131207]
      automatically matched to d1aara_
  34. Domain(s) for 2den:
  35. Domain(s) for 2dx5:
  36. Domain(s) for 2fid:
  37. Domain(s) for 2fif:
    1. 717258Domain d2fifa1: 2fif A:1-73 [133518]
      Other proteins in same PDB: d2fifb1, d2fifd1, d2fiff1
      automatically matched to d1aara_
      complexed with so4, zn
    2. 717259Domain d2fifc1: 2fif C:1-73 [133520]
      Other proteins in same PDB: d2fifb1, d2fifd1, d2fiff1
      automatically matched to d1aara_
      complexed with so4, zn
    3. 717260Domain d2fife1: 2fif E:1-73 [133522]
      Other proteins in same PDB: d2fifb1, d2fifd1, d2fiff1
      automatically matched to d1aara_
      complexed with so4, zn
  38. Domain(s) for 2fuh:
  39. Domain(s) for 2g45:
    1. 717236Domain d2g45b1: 2g45 B:1-76 [134578]
      automatically matched to d1aara_
      complexed with cl, zn
    2. 717237Domain d2g45e1: 2g45 E:1-76 [134579]
      automatically matched to d1aara_
      complexed with cl, zn
  40. Domain(s) for 2gmi:
  41. Domain(s) for 2hd5:
  42. Domain(s) for 2hth:
  43. Domain(s) for 2ibi:
  44. Domain(s) for 2j7q:
    1. 717226Domain d2j7qb1: 2j7q B:1-75 [138127]
      automatically matched to d1aara_
      complexed with gol, gve, mg, pg4
    2. 717227Domain d2j7qd1: 2j7q D:1-75 [138128]
      automatically matched to d1aara_
      complexed with gol, gve, mg, pg4
  45. Domain(s) for 2nr2:
  46. Domain(s) for 2o6v:
    1. 717248Domain d2o6va1: 2o6v A:1-75 [138922]
      automatically matched to d1aara_
      complexed with mes, slz, so4; mutant
    2. 717249Domain d2o6vb1: 2o6v B:101-151 [138923]
      automatically matched to d1gjza_
      complexed with mes, slz, so4; mutant
    3. 717250Domain d2o6vc1: 2o6v C:201-276 [138924]
      automatically matched to d1aara_
      complexed with mes, slz, so4; mutant
    4. 717251Domain d2o6ve1: 2o6v E:401-475 [138925]
      automatically matched to d1aara_
      complexed with mes, slz, so4; mutant
    5. 717252Domain d2o6vf1: 2o6v F:501-551 [138926]
      automatically matched to d1gjza_
      complexed with mes, slz, so4; mutant
    6. 717253Domain d2o6vg1: 2o6v G:601-676 [138927]
      automatically matched to d1aara_
      complexed with mes, slz, so4; mutant
  47. Domain(s) for 2oob:

More info for Species Human (Homo sapiens) [TaxId:9606] from d.15.1.1 Ubiquitin

Timeline for Species Human (Homo sapiens) [TaxId:9606] from d.15.1.1 Ubiquitin: