Lineage for Protein: Ubiquitin

  1. Root: SCOP 1.73
  2. 713694Class d: Alpha and beta proteins (a+b) [53931] (334 folds)
  3. 717080Fold d.15: beta-Grasp (ubiquitin-like) [54235] (13 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 717081Superfamily d.15.1: Ubiquitin-like [54236] (7 families) (S)
  5. 717082Family d.15.1.1: Ubiquitin-related [54237] (38 proteins)
    Pfam PF00240
  6. 717214Protein Ubiquitin [54238] (3 species)

Species:

  1. 717215Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [89830] (4 PDB entries)
    1. Domain for 1otr:
    2. Domain for 1q0w:
    3. Domain for 1wr1:
    4. Domain for 2g3q:
  2. 717220Human (Homo sapiens) [TaxId:9606] [54239] (47 PDB entries)
    identical sequence in many other species
    1. Domains for 1aar:
      1. 717246Domain d1aara_: 1aar A: [37586]
      2. 717247Domain d1aarb_: 1aar B: [37587]
        di-ubiquitin
    2. Domain for 1c3t:
    3. Domain for 1d3z:
    4. Domains for 1f9j:
      1. 717266Domain d1f9ja_: 1f9j A: [37590]
      2. 717267Domain d1f9jb_: 1f9j B: [37591]
        a new crystal form of tetraubiquitin
    5. Domain for 1fxt:
    6. Domain for 1g6j:
    7. Domains for 1gjz:
      1. 717274Domain d1gjza_: 1gjz A: [65223]
      2. 717275Domain d1gjzb_: 1gjz B: [65224]
    8. Domains for 1nbf:
      1. 717254Domain d1nbfc_: 1nbf C: [80389]
        Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_
      2. 717255Domain d1nbfd_: 1nbf D: [80390]
        Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_
        complex with USP7
        complexed with glz
    9. Domain for 1ogw:
      • 717223Domain d1ogwa_: 1ogw A: [87001]
        synthetic protein with fluoro-Leu at 50 and 67
        complexed with lef
    10. Domains for 1p3q:
      1. 717291Domain d1p3qu_: 1p3q U: [87750]
        Other proteins in same PDB: d1p3qq_, d1p3qr_
      2. 717292Domain d1p3qv_: 1p3q V: [87751]
        Other proteins in same PDB: d1p3qq_, d1p3qr_
        annotated as bovine in PDB, identical to human sequence
        complexed with mse; mutant
    11. Domain for 1q5w:
    12. Domains for 1s1q:
      1. 717234Domain d1s1qb_: 1s1q B: [98352]
        Other proteins in same PDB: d1s1qa_, d1s1qc_
      2. 717235Domain d1s1qd_: 1s1q D: [98354]
        Other proteins in same PDB: d1s1qa_, d1s1qc_
        complexed with acy, cu, so4
    13. Domain for 1sif:
    14. Domains for 1tbe:
      1. 717256Domain d1tbea_: 1tbe A: [37588]
      2. 717257Domain d1tbeb_: 1tbe B: [37589]
        tetra-ubiquitin
    15. Domain for 1ubi:
    16. Domain for 1ubq:
    17. Domain for 1ud7:
    18. Domain for 1uzx:
      • 717233Domain d1uzxb_: 1uzx B: [100239]
        Other proteins in same PDB: d1uzxa_
        annotated as bovine in PDB, identical to human sequence
        complexed with mes, mso, so4
    19. Domain for 1v80:
    20. Domain for 1v81:
    21. Domains for 1wr6:
      1. 717261Domain d1wr6e1: 1wr6 E:1-72 [121186]
        automatically matched to d1aara_
      2. 717262Domain d1wr6f1: 1wr6 F:1-73 [121187]
        automatically matched to d1aara_
      3. 717263Domain d1wr6g1: 1wr6 G:1-72 [121188]
        automatically matched to d1aara_
      4. 717264Domain d1wr6h1: 1wr6 H:1-74 [121189]
        automatically matched to d1aara_
    22. Domain for 1wrd:
    23. Domains for 1xd3:
      1. 717221Domain d1xd3b_: 1xd3 B: [115146]
        Other proteins in same PDB: d1xd3a_, d1xd3c_
      2. 717222Domain d1xd3d_: 1xd3 D: [115148]
        Other proteins in same PDB: d1xd3a_, d1xd3c_
        complexed with gve, mg
    24. Domain for 1xqq:
    25. Domains for 1yd8:
      1. 717269Domain d1yd8u1: 1yd8 U:1-73 [122974]
        automatically matched to d1aara_
      2. 717270Domain d1yd8v1: 1yd8 V:1-73 [122975]
        automatically matched to d1aara_
    26. Domain for 1yx5:
    27. Domain for 1yx6:
    28. Domain for 1zgu:
    29. Domain for 2ayo:
    30. Domains for 2bgf:
      1. 717277Domain d2bgfa1: 2bgf A:1-76 [128476]
        automatically matched to d1aara_
      2. 717278Domain d2bgfb1: 2bgf B:1-76 [128477]
        automatically matched to d1aara_
    31. Domain for 2c7m:
    32. Domains for 2c7n:
      1. 717238Domain d2c7nb1: 2c7n B:1-74 [130070]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      2. 717239Domain d2c7nd1: 2c7n D:1-74 [130072]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      3. 717240Domain d2c7nf1: 2c7n F:1-74 [130073]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      4. 717241Domain d2c7nh1: 2c7n H:1-73 [130075]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      5. 717242Domain d2c7nj1: 2c7n J:1-72 [130077]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      6. 717243Domain d2c7nl1: 2c7n L:1-74 [130078]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
    33. Domains for 2d3g:
      1. 717224Domain d2d3ga1: 2d3g A:1-72 [131206]
        automatically matched to d1aara_
      2. 717225Domain d2d3gb1: 2d3g B:1-72 [131207]
        automatically matched to d1aara_
    34. Domain for 2den:
    35. Domain for 2dx5:
    36. Domain for 2fid:
    37. Domains for 2fif:
      1. 717258Domain d2fifa1: 2fif A:1-73 [133518]
        Other proteins in same PDB: d2fifb1, d2fifd1, d2fiff1
        automatically matched to d1aara_
        complexed with so4, zn
      2. 717259Domain d2fifc1: 2fif C:1-73 [133520]
        Other proteins in same PDB: d2fifb1, d2fifd1, d2fiff1
        automatically matched to d1aara_
        complexed with so4, zn
      3. 717260Domain d2fife1: 2fif E:1-73 [133522]
        Other proteins in same PDB: d2fifb1, d2fifd1, d2fiff1
        automatically matched to d1aara_
        complexed with so4, zn
    38. Domain for 2fuh:
    39. Domains for 2g45:
      1. 717236Domain d2g45b1: 2g45 B:1-76 [134578]
        automatically matched to d1aara_
        complexed with cl, zn
      2. 717237Domain d2g45e1: 2g45 E:1-76 [134579]
        automatically matched to d1aara_
        complexed with cl, zn
    40. Domain for 2gmi:
    41. Domain for 2hd5:
    42. Domain for 2hth:
    43. Domain for 2ibi:
    44. Domains for 2j7q:
      1. 717226Domain d2j7qb1: 2j7q B:1-75 [138127]
        automatically matched to d1aara_
        complexed with gol, gve, mg, pg4
      2. 717227Domain d2j7qd1: 2j7q D:1-75 [138128]
        automatically matched to d1aara_
        complexed with gol, gve, mg, pg4
    45. Domain for 2nr2:
    46. Domains for 2o6v:
      1. 717248Domain d2o6va1: 2o6v A:1-75 [138922]
        automatically matched to d1aara_
        complexed with mes, slz, so4; mutant
      2. 717249Domain d2o6vb1: 2o6v B:101-151 [138923]
        automatically matched to d1gjza_
        complexed with mes, slz, so4; mutant
      3. 717250Domain d2o6vc1: 2o6v C:201-276 [138924]
        automatically matched to d1aara_
        complexed with mes, slz, so4; mutant
      4. 717251Domain d2o6ve1: 2o6v E:401-475 [138925]
        automatically matched to d1aara_
        complexed with mes, slz, so4; mutant
      5. 717252Domain d2o6vf1: 2o6v F:501-551 [138926]
        automatically matched to d1gjza_
        complexed with mes, slz, so4; mutant
      6. 717253Domain d2o6vg1: 2o6v G:601-676 [138927]
        automatically matched to d1aara_
        complexed with mes, slz, so4; mutant
    47. Domain for 2oob:
  3. 717296Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1 PDB entry)

More info for Protein Ubiquitin from d.15.1.1: Ubiquitin-related

Timeline for Protein Ubiquitin from d.15.1.1: Ubiquitin-related: