Lineage for Family d.15.1.1: Ubiquitin-related

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1892544Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 1892545Superfamily d.15.1: Ubiquitin-like [54236] (9 families) (S)
  5. 1892546Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240

Proteins:

  1. 18925471700011n24rik protein [110796] (1 species)
  2. 18925502'-5'-oligoadenylate synthetase-like protein, OASL [117808] (1 species)
  3. 18925534931431F19Rik [142950] (1 species)
  4. 18925568430435i17rik protein [110798] (1 species)
  5. 1892559Bag-family molecular chaperone regulator-1 [142932] (2 species)
    1. 1892560Species Human (Homo sapiens) [TaxId:9606] [142933] (1 PDB entry)
      Uniprot Q99933 72-152
      the BAG domain structure is also known (63494)
    2. 1892562Species Mouse (Mus musculus) [TaxId:10090] [255463] (2 PDB entries)
  6. 1892565Dendritic cell-derived ubiquitin-like protein [142954] (1 species)
  7. 1892568DSK2 [142940] (1 species)
  8. 1892571Elongin B [54246] (2 species)
    1. 1892572Species Human (Homo sapiens) [TaxId:9606] [54247] (27 PDB entries)
    2. 1892668Species Mouse (Mus musculus) [TaxId:10090] [142930] (1 PDB entry)
      Uniprot P62869 1-98
  9. 1892670Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 [117802] (1 species)
  10. 1892673hypothetical D7wsu128e protein [110800] (1 species)
  11. 1892676Hypothetical protein At3g01050 [102782] (1 species)
  12. 1892679Interferon-induced 15 kDa protein [142936] (1 species)
  13. 1892683Large proline-rich protein BAT3 [142952] (1 species)
  14. 1892686Nedd8 [54244] (1 species)
  15. 1892726NEDD8 ultimate buster-1, NUB1 [117814] (1 species)
  16. 1892729NPL4-like protein 1 [142934] (1 species)
  17. 1892732Rub1 [54248] (1 species)
  18. 1892735Splicing factor 3 subunit 1, C-terminal domain [117799] (3 species)
    1. 1892736Species Human (Homo sapiens) [TaxId:9606] [142931] (1 PDB entry)
      Uniprot Q15459 704-789
    2. 1892738Species Mouse (Mus musculus) [TaxId:10090] [117800] (1 PDB entry)
      Uniprot Q8K4Z5 685-786
    3. 1892740Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [117801] (1 PDB entry)
      SQ Q8RXF1 683-780; T5E21.13/At1g14650
  19. 1892742SUMO-1 (smt3 homologue) [54241] (3 species)
    1. 1892743Species Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [54243] (3 PDB entries)
    2. 1892748Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [256390] (1 PDB entry)
    3. 1892750Species Human (Homo sapiens) [TaxId:9606] [54242] (8 PDB entries)
      Uniprot Q93068
  20. 1892759SUMO-2 [117816] (1 species)
  21. 1892771Tubulin-folding protein TbcE [117812] (1 species)
  22. 1892774Ubiquilin-3 [142946] (1 species)
  23. 1892778Ubiquitin [54238] (7 species)
    1. 1892779Species African clawed frog (Xenopus laevis) [TaxId:8355] [224918] (1 PDB entry)
    2. 1892781Species Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [89830] (9 PDB entries)
    3. 1892792Species Cow (Bos taurus) [TaxId:9913] [224919] (28 PDB entries)
    4. 1892856Species Human (Homo sapiens) [TaxId:9606] [54239] (149 PDB entries)
      Uniprot P62988
      identical sequence in many other species
    5. 1893172Species Mouse (Mus musculus) [TaxId:10090] [190020] (6 PDB entries)
    6. 1893185Species Norway rat (Rattus norvegicus) [TaxId:10116] [224920] (1 PDB entry)
    7. 1893187Species Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1 PDB entry)
  24. 1893190Ubiquitin carboxyl-terminal hydrolase 14 [117804] (1 species)
  25. 1893193Ubiquitin-like domain of parkin [89831] (2 species)
    1. 1893194Species Human (Homo sapiens) [TaxId:9606] [89832] (1 PDB entry)
    2. 1893196Species Mouse (Mus musculus) [TaxId:10090] [89833] (2 PDB entries)
  26. 1893199Ubiquitin-like domain of Rad23 homolog A (Hhr23a) [102775] (1 species)
  27. 1893205Ubiquitin-like domain of Rad23 homolog B (Hhr23B) [102777] (1 species)
  28. 1893209Ubiquitin-like domain of tubulin folding cofactor B [102786] (2 species)
    1. 1893210Species Mouse (Mus musculus) [TaxId:10090] [117798] (1 PDB entry)
      Uniprot Q9D1E6 11-92
    2. 1893212Species Nematode (Caenorhabditis elegans) [TaxId:6239] [102787] (1 PDB entry)
  29. 1893214Ubiquitin-like modifier protein hub1 [82579] (1 species)
  30. 1893217Ubiquitin-like N-terminal domain of PLIC-2 [75358] (1 species)
  31. 1893220Ubiquitin-like PHD and RING finger domain-containing protein 1 [142948] (1 species)
  32. 1893223Ubiquitin-like PHD and RING finger domain-containing protein 2 [142944] (1 species)
  33. 1893226Ubiquitin-like protein 3, Ubl3 [117806] (1 species)
  34. 1893229Ubiquitin-like protein 3300001g02rik [102784] (1 species)
  35. 1893232Ubiquitin-like protein 5, ubl5 [102779] (2 species)
    1. 1893233Species Human (Homo sapiens) [TaxId:9606] [102780] (1 PDB entry)
    2. 1893235Species Mouse (Mus musculus) [TaxId:10090] [102781] (1 PDB entry)
  36. 1893237Ubiquitin-like protein 7 [142942] (1 species)
  37. 1893240Ubiquitin-like protein bab25500 (2010008E23Rik) [117810] (1 species)
  38. 1893243Ubiquitin-like protein smt3a, SUMO-3 [142938] (1 species)
  39. 1893246automated matches [190118] (9 species)
    not a true protein
    1. 1893247Species African clawed frog (Xenopus laevis) [TaxId:8355] [255337] (1 PDB entry)
    2. 1893250Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189675] (2 PDB entries)
    3. 1893254Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [193751] (5 PDB entries)
    4. 1893261Species Cow (Bos taurus) [TaxId:9913] [197078] (4 PDB entries)
    5. 1893267Species Entamoeba (Entamoeba histolytica) [TaxId:5759] [193323] (2 PDB entries)
    6. 1893271Species Human (Homo sapiens) [TaxId:9606] [189560] (79 PDB entries)
    7. 1893432Species Mouse (Mus musculus) [TaxId:10090] [187278] (3 PDB entries)
    8. 1893437Species Paramecium tetraurelia strain d4-2 [TaxId:412030] [161334] (1 PDB entry)
    9. 1893439Species Schizosaccharomyces pombe [TaxId:284812] [196615] (2 PDB entries)

More info for Family d.15.1.1: Ubiquitin-related

Timeline for Family d.15.1.1: Ubiquitin-related: