SCOPe 2.08: Protein: (Pro)cathepsin B

Lineage for Protein: (Pro)cathepsin B

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.3: Cysteine proteinases [54000] (1 superfamily)
consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn

Superfamily d.3.1: Cysteine proteinases [54001] (24 families)

(S)

the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet

Family d.3.1.1: Papain-like [54002] (26 proteins)
Protein (Pro)cathepsin B [54022] (3 species)

Species:

Cow (Bos taurus) [TaxId:9913] [54025] (3 PDB entries)
1. Domain for 1ito:
  - Domain d1itoa_: 1ito A: [76787]
    complexed with e6c
2. Domain for 1qdq:
  - Domain d1qdqa_: 1qdq A: [37064]
    complexed with 074
3. Domain for 1sp4:
  - Domain d1sp4.1: 1sp4 A:,B: [98956]
    complexed with ep2
Human (Homo sapiens) [TaxId:9606] [54023] (6 PDB entries)
1. Domains for 1csb:
  1. Domain d1csb.1: 1csb A:,B: [37051]
    complexed with ep0
  2. Domain d1csb.2: 1csb D:,E: [37052]
    complexed with ep0
2. Domains for 1gmy:
  1. Domain d1gmya_: 1gmy A: [76236]
    complexed with aem, apd, dfa
  2. Domain d1gmyb_: 1gmy B: [76237]
    complexed with aem, apd, dfa
  3. Domain d1gmyc_: 1gmy C: [76238]
    complexed with aem, apd, dfa
3. Domains for 1huc:
  1. Domain d1huc.1: 1huc A:,B: [37049]
  2. Domain d1huc.2: 1huc C:,D: [37050]
4. Domain for 1pbh:
  - Domain d1pbha_: 1pbh A: [37054]
5. Domain for 2pbh:
  - Domain d2pbha_: 2pbh A: [37055]
6. Domain for 3pbh:
  - Domain d3pbha_: 3pbh A: [37053]
Norway rat (Rattus norvegicus) [TaxId:10116] [54024] (4 PDB entries)
1. Domains for 1cpj:
  1. Domain d1cpja_: 1cpj A: [37060]
  2. Domain d1cpjb_: 1cpj B: [37061]
2. Domains for 1cte:
  1. Domain d1ctea_: 1cte A: [37058]
    complexed with pys
  2. Domain d1cteb_: 1cte B: [37059]
    complexed with pys
3. Domains for 1mir:
  1. Domain d1mira_: 1mir A: [37062]
    zymogen
  2. Domain d1mirb_: 1mir B: [37063]
    zymogen
4. Domains for 1the:
  1. Domain d1thea_: 1the A: [37056]
    complexed with 0e6
  2. Domain d1theb_: 1the B: [37057]
    complexed with 0e6

More info for Protein (Pro)cathepsin B from d.3.1.1: Papain-like

Timeline for Protein (Pro)cathepsin B from d.3.1.1: Papain-like:

Protein (Pro)cathepsin B from d.3.1.1: Papain-like first appeared (with stable ids) in SCOP 1.55
Protein (Pro)cathepsin B from d.3.1.1: Papain-like appears in SCOPe 2.07