Lineage for Protein: Lysozyme

  1. Root: SCOP 1.63
  2. 251695Class d: Alpha and beta proteins (a+b) [53931] (224 folds)
  3. 251966Fold d.2: Lysozyme-like [53954] (1 superfamily)
    common alpha+beta motif for the active site region
  4. 251967Superfamily d.2.1: Lysozyme-like [53955] (7 families) (S)
  5. 251976Family d.2.1.2: C-type lysozyme [53960] (2 proteins)
  6. 252026Protein Lysozyme [53961] (16 species)
    ubiquitous in a variety of tussues ans secretions

Species:

  1. 252027Australian echidna (Tachyglossus aculeatus) [TaxId:9261] [53972] (1 PDB entry)
  2. 252029Bobwhite quail (Colinus virginianus) [TaxId:9014] [53966] (3 PDB entries)
    1. Domain for 1bql:
    2. Domain for 1dkj:
    3. Domains for 1dkk:
      1. 252030Domain d1dkka_: 1dkk A: [36404]
      2. 252031Domain d1dkkb_: 1dkk B: [36405]
        complexed with no3
  3. 252034Chicken (Gallus gallus) [TaxId:9031] [53962] (158 PDB entries)
    1. Domain for 132l:
    2. Domain for 193l:
    3. Domain for 194l:
    4. Domain for 1a2y:
    5. Domain for 1aki:
    6. Domain for 1at5:
    7. Domain for 1at6:
    8. Domain for 1azf:
    9. Domain for 1b0d:
    10. Domains for 1b2k:
      1. 252058Domain d1b2ka_: 1b2k A: [36313]
      2. 252059Domain d1b2kb_: 1b2k B: [36314]
        complexed with iod
    11. Domain for 1bgi:
    12. Domain for 1bhz:
    13. Domains for 1bvk:
      1. 252195Domain d1bvkc_: 1bvk C: [36381]
        Other proteins in same PDB: d1bvka_, d1bvkb_, d1bvkd_, d1bvke_
      2. 252196Domain d1bvkf_: 1bvk F: [36382]
        Other proteins in same PDB: d1bvka_, d1bvkb_, d1bvkd_, d1bvke_
    14. Domain for 1bvx:
    15. Domain for 1bwh:
    16. Domain for 1bwi:
    17. Domain for 1bwj:
    18. Domain for 1c08:
    19. Domain for 1c10:
    20. Domain for 1dpw:
    21. Domain for 1dpx:
    22. Domain for 1dqj:
    23. Domain for 1e8l:
    24. Domain for 1f0w:
    25. Domain for 1f10:
    26. Domain for 1fdl:
    27. Domain for 1flq:
    28. Domain for 1flu:
    29. Domain for 1flw:
    30. Domain for 1fly:
    31. Domain for 1fn5:
    32. Domain for 1g7h:
    33. Domain for 1g7i:
    34. Domain for 1g7j:
    35. Domain for 1g7l:
    36. Domain for 1g7m:
    37. Domain for 1gwd:
    38. Domain for 1h6m:
      • 252052Domain d1h6ma_: 1h6m A: [60688]
        Covalent glycosyl-enzyme intermediate
        complexed with g2f, na, nag; mutant
    39. Domain for 1h87:
    40. Domain for 1hel:
    41. Domain for 1hem:
    42. Domain for 1hen:
    43. Domain for 1heo:
    44. Domain for 1hep:
    45. Domain for 1heq:
    46. Domain for 1her:
    47. Domain for 1hew:
    48. Domains for 1hf4:
      1. 252046Domain d1hf4a_: 1hf4 A: [36303]
      2. 252047Domain d1hf4b_: 1hf4 B: [36304]
        complexed with na, no3
    49. Domain for 1hsw:
    50. Domain for 1hsx:
    51. Domain for 1ic4:
    52. Domain for 1ic5:
    53. Domain for 1ic7:
    54. Domain for 1iee:
    55. Domain for 1io5:
    56. Domain for 1ioq:
    57. Domain for 1ior:
    58. Domain for 1ios:
    59. Domain for 1iot:
    60. Domain for 1ir7:
    61. Domain for 1ir8:
    62. Domain for 1ir9:
    63. Domain for 1j1o:
    64. Domain for 1j1p:
    65. Domain for 1j1x:
    66. Domain for 1ja2:
    67. Domain for 1ja4:
    68. Domain for 1ja6:
    69. Domain for 1ja7:
    70. Domain for 1jis:
    71. Domain for 1jit:
    72. Domain for 1jiy:
    73. Domain for 1jj0:
    74. Domain for 1jj1:
    75. Domains for 1jj3:
      1. 252120Domain d1jj3a_: 1jj3 A: [66754]
      2. 252121Domain d1jj3b_: 1jj3 B: [66755]
    76. Domain for 1jpo:
    77. Domains for 1jto:
      1. 252177Domain d1jtol_: 1jto L: [67276]
        Other proteins in same PDB: d1jtoa_, d1jtob_
      2. 252178Domain d1jtom_: 1jto M: [67277]
        Other proteins in same PDB: d1jtoa_, d1jtob_
    78. Domain for 1jtt:
    79. Domain for 1kip:
    80. Domain for 1kiq:
    81. Domain for 1kir:
    82. Domain for 1kxw:
    83. Domain for 1kxx:
    84. Domain for 1kxy:
    85. Domains for 1lcn:
      1. 252056Domain d1lcna_: 1lcn A: [36309]
      2. 252057Domain d1lcnb_: 1lcn B: [36310]
        complexed with scn
    86. Domains for 1lkr:
      1. 252043Domain d1lkra_: 1lkr A: [36301]
      2. 252044Domain d1lkrb_: 1lkr B: [36302]
        complexed with iod
    87. Domain for 1lks:
    88. Domain for 1lma:
    89. Domain for 1lpi:
    90. Domain for 1lsa:
    91. Domain for 1lsb:
    92. Domain for 1lsc:
    93. Domain for 1lsd:
    94. Domain for 1lse:
    95. Domain for 1lsf:
    96. Domain for 1lsg:
    97. Domain for 1lsm:
    98. Domain for 1lsn:
    99. Domain for 1lsy:
    100. Domain for 1lsz:
    101. Domain for 1lyo:
    102. Domains for 1lys:
      1. 252107Domain d1lysa_: 1lys A: [36258]
      2. 252108Domain d1lysb_: 1lys B: [36259]
    103. Domain for 1lyz:
    104. Domain for 1lz8:
    105. Domain for 1lz9:
    106. Domain for 1lza:
    107. Domain for 1lzb:
    108. Domain for 1lzc:
    109. Domain for 1lzd:
    110. Domain for 1lze:
    111. Domain for 1lzg:
    112. Domains for 1lzh:
      1. 252206Domain d1lzha_: 1lzh A: [36298]
      2. 252207Domain d1lzhb_: 1lzh B: [36299]
        CA-atoms only
    113. Domain for 1lzn:
      • 252064Domain d1lzna_: 1lzn A: [36315]
        neutron difraction structure
        complexed with na, no3
    114. Domain for 1lzt:
    115. Domains for 1mel:
      1. 252189Domain d1mell_: 1mel L: [36291]
        Other proteins in same PDB: d1mela_, d1melb_
      2. 252190Domain d1melm_: 1mel M: [36292]
        Other proteins in same PDB: d1mela_, d1melb_
    116. Domains for 1mlc:
      1. 252173Domain d1mlce_: 1mlc E: [36283]
        Other proteins in same PDB: d1mlca1, d1mlca2, d1mlcb1, d1mlcb2, d1mlcc1, d1mlcc2, d1mlcd1, d1mlcd2
      2. 252174Domain d1mlcf_: 1mlc F: [36284]
        Other proteins in same PDB: d1mlca1, d1mlca2, d1mlcb1, d1mlcb2, d1mlcc1, d1mlcc2, d1mlcd1, d1mlcd2
    117. Domain for 1qio:
    118. Domain for 1qtk:
    119. Domains for 1rcm:
      1. 252123Domain d1rcma_: 1rcm A: [36266]
      2. 252124Domain d1rcmb_: 1rcm B: [36267]
        complexed with cm
    120. Domain for 1rfp:
    121. Domains for 1uco:
      1. 252153Domain d1ucoa_: 1uco A: [36274]
      2. 252154Domain d1ucob_: 1uco B: [36275]
    122. Domain for 1uia:
    123. Domain for 1uib:
    124. Domain for 1uic:
    125. Domain for 1uid:
    126. Domain for 1uie:
    127. Domain for 1uif:
    128. Domain for 1uig:
    129. Domain for 1uih:
    130. Domain for 1vfb:
    131. Domain for 1xei:
    132. Domain for 1xej:
    133. Domain for 1xek:
    134. Domain for 2iff:
    135. Domain for 2lym:
    136. Domain for 2lyo:
    137. Domain for 2lyz:
    138. Domain for 2lzh:
    139. Domain for 2lzt:
    140. Domain for 3hfl:
    141. Domain for 3hfm:
    142. Domain for 3lym:
    143. Domain for 3lyo:
    144. Domains for 3lyt:
      1. 252169Domain d3lyta_: 3lyt A: [36280]
      2. 252170Domain d3lytb_: 3lyt B: [36281]
    145. Domain for 3lyz:
    146. Domain for 3lzt:
    147. Domain for 4lym:
    148. Domain for 4lyo:
    149. Domains for 4lyt:
      1. 252160Domain d4lyta_: 4lyt A: [36277]
      2. 252161Domain d4lytb_: 4lyt B: [36278]
    150. Domain for 4lyz:
    151. Domain for 4lzt:
    152. Domains for 5lym:
      1. 252129Domain d5lyma_: 5lym A: [36268]
      2. 252130Domain d5lymb_: 5lym B: [36269]
        complexed with no3
    153. Domain for 5lyt:
    154. Domain for 5lyz:
    155. Domain for 6lyt:
    156. Domain for 6lyz:
    157. Domain for 7lyz:
    158. Domain for 8lyz:
  4. 252209Dog (Canis familiaris), milk [TaxId:9615] [53971] (3 PDB entries)
    1. Domains for 1el1:
      1. 252211Domain d1el1a_: 1el1 A: [59451]
      2. 252212Domain d1el1b_: 1el1 B: [59452]
        holo-form
        complexed with ca
    2. Domain for 1i56:
    3. Domain for 1qqy:
  5. 252214Guinea fowl (Numida meleagris) [TaxId:8996] [53964] (2 PDB entries)
    1. Domains for 1fbi:
      1. 252216Domain d1fbix_: 1fbi X: [36399]
        Other proteins in same PDB: d1fbih1, d1fbih2, d1fbil1, d1fbil2, d1fbip1, d1fbip2, d1fbiq1, d1fbiq2
      2. 252217Domain d1fbiy_: 1fbi Y: [36400]
        Other proteins in same PDB: d1fbih1, d1fbih2, d1fbil1, d1fbil2, d1fbip1, d1fbip2, d1fbiq1, d1fbiq2
    2. Domain for 1hhl:
  6. 252218Horse (Equus caballus), milk [TaxId:9796] [53970] (1 PDB entry)
  7. 252220Human (Homo sapiens) [TaxId:9606] [53969] (200 PDB entries)
    1. Domain for 133l:
    2. Domain for 134l:
    3. Domain for 1b5u:
    4. Domain for 1b5v:
    5. Domain for 1b5w:
    6. Domain for 1b5x:
    7. Domain for 1b5y:
    8. Domains for 1b5z:
      1. 252424Domain d1b5za_: 1b5z A: [36567]
      2. 252425Domain d1b5zb_: 1b5z B: [36568]
        mutant
    9. Domain for 1b7l:
    10. Domain for 1b7m:
    11. Domain for 1b7n:
    12. Domain for 1b7o:
    13. Domain for 1b7p:
    14. Domain for 1b7q:
    15. Domain for 1b7r:
    16. Domain for 1b7s:
    17. Domains for 1bb3:
      1. 252380Domain d1bb3a_: 1bb3 A: [36544]
      2. 252381Domain d1bb3b_: 1bb3 B: [36545]
        mutant
    18. Domains for 1bb4:
      1. 252442Domain d1bb4a_: 1bb4 A: [36583]
      2. 252443Domain d1bb4b_: 1bb4 B: [36584]
        mutant
    19. Domains for 1bb5:
      1. 252399Domain d1bb5a_: 1bb5 A: [36553]
      2. 252400Domain d1bb5b_: 1bb5 B: [36554]
        complexed with cto; mutant
    20. Domain for 1c43:
    21. Domain for 1c45:
    22. Domain for 1c46:
    23. Domain for 1c7p:
    24. Domain for 1cj6:
    25. Domain for 1cj7:
    26. Domain for 1cj8:
    27. Domain for 1cj9:
    28. Domain for 1ckc:
    29. Domain for 1ckd:
    30. Domain for 1ckf:
    31. Domains for 1ckg:
      1. 252430Domain d1ckga_: 1ckg A: [36574]
      2. 252431Domain d1ckgb_: 1ckg B: [36575]
        mutant
    32. Domain for 1ckh:
    33. Domain for 1d6p:
    34. Domain for 1d6q:
    35. Domain for 1di3:
    36. Domain for 1di4:
    37. Domain for 1di5:
    38. Domain for 1eq4:
    39. Domain for 1eq5:
    40. Domain for 1eqe:
    41. Domain for 1gay:
    42. Domain for 1gaz:
    43. Domain for 1gb0:
    44. Domain for 1gb2:
    45. Domain for 1gb3:
    46. Domain for 1gb5:
    47. Domain for 1gb6:
    48. Domain for 1gb7:
    49. Domain for 1gb8:
    50. Domain for 1gb9:
    51. Domain for 1gbo:
    52. Domain for 1gbw:
    53. Domain for 1gbx:
    54. Domain for 1gby:
    55. Domain for 1gbz:
    56. Domain for 1gdw:
    57. Domain for 1gdx:
    58. Domain for 1ge0:
    59. Domain for 1ge1:
    60. Domain for 1ge2:
    61. Domain for 1ge3:
    62. Domain for 1ge4:
    63. Domain for 1gev:
    64. Domain for 1gez:
    65. Domain for 1gf0:
    66. Domain for 1gf3:
    67. Domain for 1gf4:
    68. Domain for 1gf5:
    69. Domain for 1gf6:
    70. Domain for 1gf7:
    71. Domain for 1gf8:
    72. Domain for 1gf9:
    73. Domain for 1gfa:
    74. Domain for 1gfe:
    75. Domain for 1gfg:
    76. Domain for 1gfh:
    77. Domain for 1gfj:
    78. Domain for 1gfk:
    79. Domain for 1gfr:
    80. Domain for 1gft:
    81. Domain for 1gfu:
    82. Domain for 1gfv:
    83. Domain for 1hnl:
    84. Domain for 1i1z:
    85. Domain for 1i20:
    86. Domains for 1i22:
      1. 252369Domain d1i22a_: 1i22 A: [36559]
      2. 252370Domain d1i22b_: 1i22 B: [36560]
      3. 252371Domain d1i22c_: 1i22 C: [36561]
      4. 252372Domain d1i22d_: 1i22 D: [36562]
        complexed with ca; mutant
    87. Domain for 1inu:
    88. Domain for 1ioc:
    89. Domain for 1ip1:
    90. Domain for 1ip2:
    91. Domains for 1ip3:
      1. 252288Domain d1ip3a_: 1ip3 A: [66248]
      2. 252289Domain d1ip3b_: 1ip3 B: [66249]
        complexed with na, so4; mutant
    92. Domain for 1ip4:
    93. Domain for 1ip5:
    94. Domain for 1ip6:
    95. Domains for 1ip7:
      1. 252387Domain d1ip7a_: 1ip7 A: [66253]
      2. 252388Domain d1ip7b_: 1ip7 B: [66254]
        complexed with na; mutant
    96. Domain for 1iwt:
    97. Domain for 1iwu:
    98. Domain for 1iwv:
    99. Domain for 1iww:
    100. Domain for 1iwx:
    101. Domain for 1iwy:
    102. Domain for 1iwz:
    103. Domain for 1iy3:
    104. Domain for 1iy4:
    105. Domain for 1jka:
    106. Domain for 1jkb:
    107. Domain for 1jkc:
    108. Domain for 1jkd:
    109. Domain for 1jsf:
    110. Domain for 1jwr:
    111. Domain for 1laa:
    112. Domain for 1lhh:
    113. Domain for 1lhi:
    114. Domain for 1lhj:
    115. Domain for 1lhk:
    116. Domain for 1lhl:
    117. Domain for 1lhm:
    118. Domains for 1lj3:
      1. 252403Domain d1lj3a_: 1lj3 A: [78029]
      2. 252404Domain d1lj3b_: 1lj3 B: [78030]
        complexed with no3
    119. Domains for 1lj4:
      1. 252395Domain d1lj4a_: 1lj4 A: [78031]
      2. 252396Domain d1lj4b_: 1lj4 B: [78032]
        complexed with no3
    120. Domains for 1lje:
      1. 252397Domain d1ljea_: 1lje A: [78037]
      2. 252398Domain d1ljeb_: 1lje B: [78038]
        complexed with no3
    121. Domains for 1ljf:
      1. 252374Domain d1ljfa_: 1ljf A: [78039]
      2. 252375Domain d1ljfb_: 1ljf B: [78040]
        complexed with no3
    122. Domains for 1ljg:
      1. 252405Domain d1ljga_: 1ljg A: [78041]
      2. 252406Domain d1ljgb_: 1ljg B: [78042]
        complexed with no3
    123. Domains for 1ljh:
      1. 252376Domain d1ljha_: 1ljh A: [78043]
      2. 252377Domain d1ljhb_: 1ljh B: [78044]
        complexed with no3
    124. Domains for 1lji:
      1. 252407Domain d1ljia_: 1lji A: [78045]
      2. 252408Domain d1ljib_: 1lji B: [78046]
        complexed with no3
    125. Domains for 1ljj:
      1. 252409Domain d1ljja_: 1ljj A: [78047]
      2. 252410Domain d1ljjb_: 1ljj B: [78048]
        complexed with no3
    126. Domains for 1ljk:
      1. 252418Domain d1ljka_: 1ljk A: [78049]
      2. 252419Domain d1ljkb_: 1ljk B: [78050]
        complexed with no3
    127. Domain for 1lmt:
    128. Domain for 1loz:
    129. Domain for 1lyy:
    130. Domain for 1lz1:
    131. Domain for 1lz4:
    132. Domain for 1lz5:
    133. Domain for 1lz6:
    134. Domain for 1lzr:
    135. Domains for 1lzs:
      1. 252232Domain d1lzsa_: 1lzs A: [36412]
      2. 252233Domain d1lzsb_: 1lzs B: [36413]
        complexed with na, nag
    136. Domain for 1oua:
    137. Domain for 1oub:
    138. Domain for 1ouc:
    139. Domain for 1oud:
    140. Domain for 1oue:
    141. Domain for 1ouf:
    142. Domain for 1oug:
    143. Domain for 1ouh:
    144. Domain for 1oui:
    145. Domain for 1ouj:
    146. Domains for 1qsw:
      1. 252389Domain d1qswa_: 1qsw A: [63330]
      2. 252390Domain d1qswb_: 1qsw B: [63331]
      3. 252391Domain d1qswc_: 1qsw C: [63332]
      4. 252392Domain d1qswd_: 1qsw D: [63333]
        mutant
    147. Domain for 1re2:
    148. Domain for 1rem:
    149. Domain for 1rex:
    150. Domain for 1rey:
    151. Domain for 1rez:
    152. Domain for 1tay:
    153. Domain for 1tby:
    154. Domain for 1tcy:
    155. Domain for 1tdy:
    156. Domain for 1wqm:
    157. Domain for 1wqn:
    158. Domain for 1wqo:
    159. Domain for 1wqp:
    160. Domain for 1wqq:
    161. Domain for 1wqr:
    162. Domain for 1yam:
    163. Domain for 1yan:
    164. Domain for 1yao:
    165. Domain for 1yap:
    166. Domain for 1yaq:
    167. Domain for 207l:
    168. Domain for 208l:
    169. Domain for 2bqa:
    170. Domain for 2bqb:
    171. Domain for 2bqc:
    172. Domain for 2bqd:
    173. Domain for 2bqe:
    174. Domain for 2bqf:
    175. Domain for 2bqg:
    176. Domain for 2bqh:
    177. Domain for 2bqi:
    178. Domain for 2bqj:
    179. Domain for 2bqk:
    180. Domain for 2bql:
    181. Domain for 2bqm:
    182. Domain for 2bqn:
    183. Domain for 2bqo:
    184. Domain for 2hea:
    185. Domain for 2heb:
    186. Domain for 2hec:
    187. Domain for 2hed:
    188. Domain for 2hee:
    189. Domain for 2hef:
    190. Domain for 2lhm:
    191. Domains for 2mea:
      1. 252432Domain d2meaa_: 2mea A: [36572]
      2. 252433Domain d2meab_: 2mea B: [36573]
        mutant
    192. Domain for 2meb:
    193. Domains for 2mec:
      1. 252436Domain d2meca_: 2mec A: [36576]
      2. 252437Domain d2mecb_: 2mec B: [36577]
        mutant
    194. Domain for 2med:
    195. Domain for 2mee:
    196. Domain for 2mef:
    197. Domain for 2meg:
    198. Domain for 2meh:
    199. Domain for 2mei:
    200. Domain for 3lhm:
  8. 252446Japanese quail (Coturnix coturnix japonica) [TaxId:93934] [53967] (1 PDB entry)
  9. 252448Mouse (Mus musculus) [TaxId:10090] [75329] (1 PDB entry)
  10. 252450Pheasant (Phasianus colchicus) [TaxId:9054] [53965] (2 PDB entries)
    1. Domains for 1ghl:
      1. 252451Domain d1ghla_: 1ghl A: [36401]
      2. 252452Domain d1ghlb_: 1ghl B: [36402]
    2. Domain for 1jhl:
  11. Pigeon egg-white [53968] (1 PDB entry)
  12. 252456Rainbow trout (Oncorhynchus mykiss) [TaxId:8022] [53973] (7 PDB entries)
    1. Domain for 1bb6:
    2. Domain for 1bb7:
    3. Domain for 1lmc:
    4. Domain for 1lmn:
    5. Domain for 1lmo:
    6. Domain for 1lmp:
    7. Domain for 1lmq:
  13. 252464Silkworm (Bombyx mori) [TaxId:7091] [64201] (1 PDB entry)
  14. 252466Tasar silkworm (Antheraea mylitta) [TaxId:34739] [69627] (1 PDB entry)
    induced antibacterial protein
  15. Tortoise [53974] (1 PDB entry)
  16. 252470Turkey (Meleagris gallopavo) [TaxId:9103] [53963] (12 PDB entries)
    1. Domain for 135l:
    2. Domains for 1dzb:
      1. 252480Domain d1dzbx_: 1dzb X: [36393]
        Other proteins in same PDB: d1dzba1, d1dzba2, d1dzbb1, d1dzbb2
      2. 252481Domain d1dzby_: 1dzb Y: [36394]
        Other proteins in same PDB: d1dzba1, d1dzba2, d1dzbb1, d1dzbb2
    3. Domain for 1jef:
    4. Domain for 1jse:
    5. Domains for 1jtp:
      1. 252478Domain d1jtpl_: 1jtp L: [67280]
        Other proteins in same PDB: d1jtpa_, d1jtpb_
      2. 252479Domain d1jtpm_: 1jtp M: [67281]
        Other proteins in same PDB: d1jtpa_, d1jtpb_
        complexed with fmt, na
    6. Domain for 1ljn:
    7. Domain for 1lz2:
    8. Domain for 1lz3:
    9. Domain for 1lzy:
    10. Domain for 1tew:
    11. Domain for 2lz2:
    12. Domain for 3lz2:

More info for Protein Lysozyme from d.2.1.2: C-type lysozyme

Timeline for Protein Lysozyme from d.2.1.2: C-type lysozyme: