SCOPe 2.07: Protein: Beta-ketoacyl-ACP synthase II

Lineage for Protein: Beta-ketoacyl-ACP synthase II

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.95: Thiolase-like [53900] (1 superfamily)
consists of two similar domains related by pseudo dyad; duplication
3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32451; strand 5 is antiparallel to the rest

Superfamily c.95.1: Thiolase-like [53901] (3 families)
Family c.95.1.1: Thiolase-related [53902] (10 proteins)
Protein Beta-ketoacyl-ACP synthase II [53909] (6 species)

Species:

Escherichia coli [TaxId:562] [53910] (4 PDB entries)
1. Domains for 1b3n:
  1. Domain d1b3na1: 1b3n A:2-251 [35966]
    complexed with cer
  2. Domain d1b3na2: 1b3n A:252-412 [35967]
    complexed with cer
2. Domains for 1kas:
  1. Domain d1kasa1: 1kas A:2-251 [35964]
  2. Domain d1kasa2: 1kas A:252-412 [35965]
3. Domains for 2gfv:
  1. Domain d2gfva1: 2gfv A:2-251 [135110]
    automated match to d1e5ma1
    mutant
  2. Domain d2gfva2: 2gfv A:252-412 [135111]
    automated match to d1e5ma2
    mutant
4. Domains for 2gfx:
  1. Domain d2gfxa1: 2gfx A:2-251 [135114]
    automated match to d1e5ma1
    complexed with pmn
  2. Domain d2gfxa2: 2gfx A:252-412 [135115]
    automated match to d1e5ma2
    complexed with pmn
Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [89793] (4 PDB entries)
1. Domains for 1ox0:
  1. Domain d1ox0a1: 1ox0 A:1-251 [87495]
    Other proteins in same PDB: d1ox0a3
    complexed with mg
  2. Domain d1ox0a2: 1ox0 A:252-409 [87496]
    Other proteins in same PDB: d1ox0a3
    complexed with mg
2. Domains for 1oxh:
  1. Domain d1oxha1: 1oxh A:2-251 [87509]
    complexed with mg
  2. Domain d1oxha2: 1oxh A:252-409 [87510]
    complexed with mg
  3. Domain d1oxhb1: 1oxh B:2-251 [87511]
    complexed with mg
  4. Domain d1oxhb2: 1oxh B:252-409 [87512]
    complexed with mg
  5. Domain d1oxhc1: 1oxh C:2-251 [87513]
    complexed with mg
  6. Domain d1oxhc2: 1oxh C:252-409 [87514]
    complexed with mg
  7. Domain d1oxhd1: 1oxh D:2-251 [87515]
    complexed with mg
  8. Domain d1oxhd2: 1oxh D:252-409 [87516]
    complexed with mg
3. Domains for 2alm:
  1. Domain d2alma1: 2alm A:1-251 [126978]
    Other proteins in same PDB: d2alma3
    automated match to d1ox0a1
    complexed with mg; mutant
  2. Domain d2alma2: 2alm A:252-409 [126979]
    Other proteins in same PDB: d2alma3
    automated match to d1ox0a2
    complexed with mg; mutant
4. Domains for 2rjt:
  1. Domain d2rjta1: 2rjt A:2-251 [206139]
    automated match to d1ox0a1
    mutant
  2. Domain d2rjta2: 2rjt A:252-409 [206140]
    automated match to d1ox0a2
    mutant
  3. Domain d2rjtb1: 2rjt B:2-251 [206141]
    automated match to d1ox0a1
    mutant
  4. Domain d2rjtb2: 2rjt B:252-409 [206142]
    automated match to d1ox0a2
    mutant
  5. Domain d2rjtc1: 2rjt C:2-251 [206143]
    automated match to d1ox0a1
    mutant
  6. Domain d2rjtc2: 2rjt C:252-409 [206144]
    automated match to d1ox0a2
    mutant
  7. Domain d2rjtd1: 2rjt D:2-251 [206145]
    automated match to d1ox0a1
    mutant
  8. Domain d2rjtd2: 2rjt D:252-409 [206146]
    automated match to d1ox0a2
    mutant
Staphylococcus aureus [TaxId:1280] [225072] (1 PDB entry)
- Domains for 2gqd:
  1. Domain d2gqda1: 2gqd A:4-252 [204445]
    automated match to d1ox0a1
  2. Domain d2gqda2: 2gqd A:253-414 [204446]
    automated match to d1ox0a2
  3. Domain d2gqdb1: 2gqd B:4-252 [204447]
    automated match to d1ox0a1
  4. Domain d2gqdb2: 2gqd B:253-414 [204448]
    automated match to d1ox0a2
Synechocystis sp. [TaxId:1143] [53911] (1 PDB entry)
- Domains for 1e5m:
  1. Domain d1e5ma1: 1e5m A:6-255 [58973]
  2. Domain d1e5ma2: 1e5m A:256-416 [58974]
Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId:3702] [117749] (2 PDB entries)
Uniprot Q8L3X9
1. Domains for 1w0i:
  1. Domain d1w0ia1: 1w0i A:31-300 [114065]
    complexed with k, so4
  2. Domain d1w0ia2: 1w0i A:301-461 [114066]
    complexed with k, so4
  3. Domain d1w0ib1: 1w0i B:31-300 [114067]
    complexed with k, so4
  4. Domain d1w0ib2: 1w0i B:301-461 [114068]
    complexed with k, so4
2. Domains for 2ix4:
  1. Domain d2ix4a1: 2ix4 A:31-300 [137759]
    automated match to d1w0ia1
    complexed with 6na, k
  2. Domain d2ix4a2: 2ix4 A:301-461 [137760]
    automated match to d1w0ia2
    complexed with 6na, k
  3. Domain d2ix4b1: 2ix4 B:31-300 [137761]
    automated match to d1w0ia1
    complexed with 6na, k
  4. Domain d2ix4b2: 2ix4 B:301-461 [137762]
    automated match to d1w0ia2
    complexed with 6na, k
Thermus thermophilus [TaxId:274] [89792] (1 PDB entry)
- Domains for 1j3n:
  1. Domain d1j3na1: 1j3n A:1-249 [84074]
    structural genomics
    complexed with cit, mg
  2. Domain d1j3na2: 1j3n A:250-408 [84075]
    structural genomics
    complexed with cit, mg
  3. Domain d1j3nb1: 1j3n B:1-249 [84076]
    structural genomics
    complexed with cit, mg
  4. Domain d1j3nb2: 1j3n B:250-408 [84077]
    structural genomics
    complexed with cit, mg

More info for Protein Beta-ketoacyl-ACP synthase II from c.95.1.1: Thiolase-related

Timeline for Protein Beta-ketoacyl-ACP synthase II from c.95.1.1: Thiolase-related:

Protein Beta-ketoacyl-ACP synthase II from c.95.1.1: Thiolase-related first appeared (with stable ids) in SCOP 1.55
Protein Beta-ketoacyl-ACP synthase II from c.95.1.1: Thiolase-related appears in SCOPe 2.06
Protein Beta-ketoacyl-ACP synthase II from c.95.1.1: Thiolase-related does not appear in SCOPe 2.08