Lineage for Family c.88.1.1: Glutaminase/Asparaginase

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2142620Fold c.88: Glutaminase/Asparaginase [53773] (1 superfamily)
    consists of two non-similar alpha/beta domains, 3 layers (a/b/a) each
    Domain 1 has mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest; left-handed crossover connection between strands 4 and 5
    Domain 2 has parallel beta-sheet of 4 strands, order 1234
  4. 2142621Superfamily c.88.1: Glutaminase/Asparaginase [53774] (2 families) (S)
  5. 2142622Family c.88.1.1: Glutaminase/Asparaginase [53775] (4 protein domains)
    automatically mapped to Pfam PF00710

Protein Domains:

  1. 2142623Asparaginase type II [53776] (5 species)
    1. 2142624Species Erwinia chrysanthemi [TaxId:556] [53779] (8 PDB entries)
    2. 2142653Species Escherichia coli [TaxId:562] [53777] (7 PDB entries)
    3. 2142676Species Vibrio cholerae [TaxId:666] [159797] (2 PDB entries)
      Uniprot Q9KQK3 2-337
    4. 2142685Species Wolinella succinogenes [TaxId:844] [53778] (1 PDB entry)
    5. 2289052Species Wolinella succinogenes [TaxId:273121] [332353] (4 PDB entries)
  2. 2142688Glutaminase-asparaginase [53780] (2 species)
    1. 2142689Species Acinetobacter glutaminasificans [TaxId:474] [53781] (1 PDB entry)
    2. 2142691Species Pseudomonas sp., 7A [TaxId:306] [53782] (4 PDB entries)
  3. 2142702Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD [142776] (2 species)
    1. 2142703Species Methanobacterium thermoautotrophicum [TaxId:145262] [142778] (1 PDB entry)
      Uniprot O26802 84-435
    2. 2142705Species Pyrococcus abyssi [TaxId:29292] [142777] (1 PDB entry)
      Uniprot Q9V0T9 76-438
  4. 2142708automated matches [190446] (8 species)
    not a true protein
    1. 2142709Species Escherichia coli [TaxId:562] [225264] (3 PDB entries)
    2. Species Methanothermobacter thermautotrophicus [TaxId:145262] [255110] (1 PDB entry)
    3. 2142724Species Pectobacterium atrosepticum [TaxId:218491] [255007] (1 PDB entry)
    4. 2142733Species Pectobacterium atrosepticum [TaxId:29471] [187353] (2 PDB entries)
    5. 2142754Species Pectobacterium carotovorum [TaxId:554] [188521] (1 PDB entry)
    6. 2142763Species Yersinia pestis [TaxId:214092] [189425] (1 PDB entry)
    7. 2270579Species Dickeya chrysanthemi [TaxId:556] [313884] (5 PDB entries)
    8. 2289049Species Wolinella succinogenes [TaxId:273121] [332350] (1 PDB entry)

More info for Family c.88.1.1: Glutaminase/Asparaginase

Timeline for Family c.88.1.1: Glutaminase/Asparaginase: