SCOP 1.69: Family c.56.5.4: Bacterial dinuclear zinc exopeptidases

Lineage for Family c.56.5.4: Bacterial dinuclear zinc exopeptidases

1. Root: SCOP 1.69

2. Class c: Alpha and beta proteins (a/b) [51349] (136 folds)

3. Fold c.56: Phosphorylase/hydrolase-like [53162] (6 superfamilies)
   core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops

4. Superfamily c.56.5: Zn-dependent exopeptidases [53187] (6 families)
   core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest

5. Family c.56.5.4: Bacterial dinuclear zinc exopeptidases [53204] (9 proteins)

Proteins:

1. Aminoacylase-1, catalytic domain [102511] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [102512] (1 PDB entry)

2. Aminopeptidase [53205] (2 species)

   1. Species Aeromonas proteolytica [TaxId:671] [53206] (7 PDB entries)
      synonym: Vibrio proteolyticus

   2. Species Streptomyces griseus [TaxId:1911] [53207] (5 PDB entries)

3. Aminopeptidase PepV [82450] (1 species)
   unspecific amino dipeptidase

   • Species Lactobacillus delbrueckii [82451] (1 PDB entry)

4. Carboxypeptidase G2, catalytic domain [53208] (1 species)

   • Species Pseudomonas sp., strain rs-16 [TaxId:306] [53209] (1 PDB entry)

5. Hypothetical protein YsdC, catalytic domain [102513] (1 species)
   contains insert beta-barrel domain

   • Species Bacillus subtilis [TaxId:1423] [102514] (1 PDB entry)

6. Peptidase T (tripeptidase), catalytic domain [75250] (2 species)

   1. Species Escherichia coli [TaxId:562] [102506] (1 PDB entry)

   2. Species Salmonella typhimurium [TaxId:90371] [75251] (1 PDB entry)

7. Peptidase-like beta-alanine synthase, catalytic domain [102507] (1 species)

   • Species Yeast (Saccharomyces kluyveri) [TaxId:4934] [102508] (2 PDB entries)

8. Putative endoglucanase TM1048, catalytic domain [102515] (1 species)
   contains insert beta-barrel domain

   • Species Thermotoga maritima [TaxId:243274] [102516] (1 PDB entry)

9. Succinyl-diaminopimelate desuccinylase, catalytic domain [102509] (1 species)

   • Species Neisseria meningitidis [TaxId:487] [102510] (1 PDB entry)

More info for Family c.56.5.4: Bacterial dinuclear zinc exopeptidases

Timeline for Family c.56.5.4: Bacterial dinuclear zinc exopeptidases:

• Family c.56.5.4: Bacterial dinuclear zinc exopeptidases first appeared (with stable ids) in SCOP 1.55, called Family c.56.5.4: Bacterial exopeptidases
  
• Family c.56.5.4: Bacterial dinuclear zinc exopeptidases appears in SCOP 1.67
  
• Family c.56.5.4: Bacterial dinuclear zinc exopeptidases appears in SCOP 1.71
  
• Family c.56.5.4: Bacterial dinuclear zinc exopeptidases appears in the current release, SCOPe 2.08