Lineage for Species: Pyrococcus kodakaraensis [TaxId: 311400]
- Root: SCOPe 2.05
Class c: Alpha and beta proteins (a/b) [51349] (148 folds) 
Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the restSuperfamily c.55.3: Ribonuclease H-like [53098] (15 families) 
consists of one domain of this fold
Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (16 proteins)
contains Pfam PF00929
Protein Exonuclease domain of family B DNA polymerases [53125] (8 species)
elaborated with additional structures and the N-terminal subdomain
Species Pyrococcus kodakaraensis [TaxId:311400] [53131] (2 PDB entries)
Uniprot P56689 1-758 # 93% sequence identity; Thermococcus kodakarensis KOD1 TaxID: 69014
additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
PDB entries in Species: Pyrococcus kodakaraensis [TaxId: 311400]:
- Domain(s) for 1wn7:
Domain d1wn7a1: 1wn7 A:1-347 [121088]
Other proteins in same PDB: d1wn7a2
complexed with gol, ni; mutant
- Domain(s) for 1wns:
Domain d1wnsa1: 1wns A:1-347 [109437]
Other proteins in same PDB: d1wnsa2
More info for Species Pyrococcus kodakaraensis [TaxId:311400] from c.55.3.5 Exonuclease domain of family B DNA polymerases
Timeline for Species Pyrococcus kodakaraensis [TaxId:311400] from c.55.3.5 Exonuclease domain of family B DNA polymerases:
- Species Pyrococcus kodakaraensis [TaxId:311400] from c.55.3.5 Exonuclease domain of family B DNA polymerases first appeared (with stable ids) in SCOP 1.55, called Species Archaea (Pyrococcus kodakaraensis) [TaxId:311400] from c.55.3.5 Exonuclease domain of family B (archaeal and phage) DNA polymerases
- Species Pyrococcus kodakaraensis [TaxId:311400] from c.55.3.5 Exonuclease domain of family B DNA polymerases appears in SCOPe 2.04
- Species Pyrococcus kodakaraensis [TaxId:311400] from c.55.3.5 Exonuclease domain of family B DNA polymerases appears in SCOPe 2.06
- Species Pyrococcus kodakaraensis [TaxId:311400] from c.55.3.5 Exonuclease domain of family B DNA polymerases appears in the current release, SCOPe 2.08