SCOPe 2.08: Species: Desulfurococcus tok [TaxId: 108142]

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
consists of one domain of this fold
Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 proteins)
contains Pfam PF00929
Protein Exonuclease domain of family B DNA polymerases [53125] (8 species)
elaborated with additional structures and the N-terminal subdomain
Species Desulfurococcus tok [TaxId:108142] [53130] (2 PDB entries)
additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold

Domain(s) for 1d5a:
- Domain d1d5aa1: 1d5a A:1-347 [33723]
  Other proteins in same PDB: d1d5aa2
  complexed with mg, so4
  has additional subdomain(s) that are not in the common domain
Domain(s) for 1qqc:
- Domain d1qqca1: 1qqc A:1-347 [33724]
  Other proteins in same PDB: d1qqca2
  complexed with mg, so4
  has additional subdomain(s) that are not in the common domain

Timeline for Species Desulfurococcus tok [TaxId:108142] from c.55.3.5 Exonuclease domain of family B DNA polymerases:

Species Desulfurococcus tok [TaxId:108142] from c.55.3.5 Exonuclease domain of family B DNA polymerases first appeared (with stable ids) in SCOP 1.55, called Species Thermophilic archaebacterium (Desulfurococcus tok) [TaxId:108142] from c.55.3.5 Exonuclease domain of family B (archaeal and phage) DNA polymerases
Species Desulfurococcus tok [TaxId:108142] from c.55.3.5 Exonuclease domain of family B DNA polymerases appears in SCOPe 2.07