Lineage for Protein: Class II ribonuclease H (RNase HII)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2883383Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2885833Superfamily c.55.3: Ribonuclease H-like [53098] (18 families) (S)
    consists of one domain of this fold
  5. 2885834Family c.55.3.1: Ribonuclease H [53099] (5 proteins)
  6. 2885870Protein Class II ribonuclease H (RNase HII) [53103] (5 species)

Species:

  1. 2885871Archaeoglobus fulgidus [TaxId:2234] [64093] (2 PDB entries)
    1. Domain for 1i39:
      • 2885872Domain d1i39a_: 1i39 A: [61585]
        has additional insertions and/or extensions that are not grouped together
    2. Domain for 1i3a:
      • 2885873Domain d1i3aa_: 1i3a A: [61586]
        complexed with nco
        has additional insertions and/or extensions that are not grouped together
  2. 2885874Methanococcus jannaschii [TaxId:2190] [53104] (1 PDB entry)
    • Domains for 1eke:
      1. 2885875Domain d1ekea_: 1eke A: [33572]
        complexed with mes
        has additional insertions and/or extensions that are not grouped together
      2. 2885876Domain d1ekeb_: 1eke B: [33573]
        complexed with mes
        has additional insertions and/or extensions that are not grouped together
  3. 2885877Pyrococcus horikoshii [TaxId:53953] [110639] (2 PDB entries)
    Uniprot O59351
    1. Domains for 1uax:
      1. 2885878Domain d1uaxa_: 1uax A: [107764]
        has additional insertions and/or extensions that are not grouped together
      2. 2885879Domain d1uaxb_: 1uax B: [107765]
        has additional insertions and/or extensions that are not grouped together
    2. Domain for 1x1p:
      • 2885880Domain d1x1pa1: 1x1p A:1-196 [121594]
        Other proteins in same PDB: d1x1pa2
        automatically matched to d1uaxa_
        has additional insertions and/or extensions that are not grouped together
  4. 2885881Thermococcus kodakaraensis [TaxId:311400] [64094] (1 PDB entry)
    • Domain for 1io2:
      • 2885882Domain d1io2a_: 1io2 A: [62612]
        has additional insertions and/or extensions that are not grouped together
  5. 2885883Thermotoga maritima [TaxId:2336] [142489] (1 PDB entry)
    Uniprot Q9X017 1-221
    • Domain for 2etj:
      • 2885884Domain d2etja1: 2etj A:1-221 [132360]
        complexed with cl, edo, mg
        has additional insertions and/or extensions that are not grouped together

More info for Protein Class II ribonuclease H (RNase HII) from c.55.3.1: Ribonuclease H

Timeline for Protein Class II ribonuclease H (RNase HII) from c.55.3.1: Ribonuclease H: