Lineage for Superfamily c.52.1: Restriction endonuclease-like

  1. Root: SCOP 1.71
  2. 570216Class c: Alpha and beta proteins (a/b) [51349] (134 folds)
  3. 585880Fold c.52: Restriction endonuclease-like [52979] (3 superfamilies)
    core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
  4. 585881Superfamily c.52.1: Restriction endonuclease-like [52980] (30 families) (S)

Families:

  1. 585882c.52.1.1: Restriction endonuclease EcoRI [52981] (1 protein)
  2. 585894c.52.1.2: Restriction endonuclease EcoRV [52984] (1 protein)
  3. 585952c.52.1.3: Restriction endonuclease BamHI [52987] (1 protein)
  4. 585964c.52.1.4: Restriction endonuclease BglI [52990] (1 protein)
  5. 585968c.52.1.5: Restriction endonuclease BglII [52993] (1 protein)
  6. 585976c.52.1.6: Restriction endonuclease PvuII [52996] (1 protein)
  7. 585998c.52.1.7: Cfr10I/Bse634I [52999] (2 proteins)
  8. 586006c.52.1.8: Restriction endonuclease MunI [53002] (1 protein)
  9. 586011c.52.1.9: Restriction endonuclease NaeI [53005] (1 protein)
  10. 586018c.52.1.10: Restriction endonuclease NgoIV [53008] (1 protein)
  11. 586025c.52.1.11: Restriction endonuclease BsobI [53011] (1 protein)
  12. 586030c.52.1.12: Restriction endonuclease FokI, C-terminal (catalytic) domain [53014] (1 protein)
  13. 586036c.52.1.13: lambda exonuclease [53017] (1 protein)
  14. 586042c.52.1.14: DNA mismatch repair protein MutH from [53020] (1 protein)
  15. 586048c.52.1.15: Very short patch repair (VSR) endonuclease [53023] (1 protein)
  16. 586054c.52.1.16: TnsA endonuclease, N-terminal domain [53026] (1 protein)
  17. 586061c.52.1.17: Endonuclease I (Holliday junction resolvase) [53029] (1 protein)
  18. 586076c.52.1.18: Hjc-like [64080] (2 proteins)
    Pfam 01870
  19. 586092c.52.1.19: Restriction endonuclease HincII [69525] (1 protein)
  20. 586111c.52.1.20: XPF/Rad1/Mus81 nuclease [89716] (1 protein)
  21. 586118c.52.1.21: Restriction endonuclease BstyI [102471] (1 protein)
  22. 586122c.52.1.22: Type II restriction endonuclease catalytic domain [102474] (1 protein)
  23. 586127c.52.1.23: Restriction endonuclease MspI [110624] (1 protein)
  24. 586132c.52.1.24: Exodeoxyribonuclease V beta chain (RecB), C-terminal domain [117619] (1 protein)
    related to the RecC domain
  25. 586137c.52.1.25: Exodeoxyribonuclease V beta chain (RecC), C-terminal domain [117622] (1 protein)
    related to the RecB domain
  26. 586142c.52.1.26: Hypothetical protein VC1899 [117625] (1 protein)
    contains 2 extra N-terminal domains; d1: [alpha/beta; 3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214567; strand 6 is antiparallel to the rest; topological similarity to the Formyltransferase fold (scop_cf 53327)]; d2: [distorted "winged helix" fold (scop_sf 46785)]
  27. 586146c.52.1.27: Hypothetical protein TT1808 (TTHA1514) [117628] (1 protein)
    Pfam 05685; DUF820
  28. 586152c.52.1.28: RecU-like [117631] (1 protein)
    Pfam 03838
  29. 586162c.52.1.29: Restriction endonuclease EcoO109IR [117635] (1 protein)
  30. 586169c.52.1.30: MRR-like [117638] (1 protein)
    Pfam 04471

More info for Superfamily c.52.1: Restriction endonuclease-like

Timeline for Superfamily c.52.1: Restriction endonuclease-like: