SCOPe 2.01: Protein: Thioredoxin

Lineage for Protein: Thioredoxin

Root: SCOPe 2.01
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
Fold c.47: Thioredoxin fold [52832] (2 superfamilies)
core: 3 layers, a/b/a; mixed beta-sheet of 4 strands, order 4312; strand 3 is antiparallel to the rest
Superfamily c.47.1: Thioredoxin-like [52833] (24 families)
Family c.47.1.1: Thioltransferase [52834] (16 proteins)
Protein Thioredoxin [52835] (14 species)

Species:

Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId:405212] [52839] (4 PDB entries)
Uniprot P80579
1. Domains for 1nsw:
  1. Domain d1nswa_: 1nsw A: [92097]
    mutant
  2. Domain d1nswb_: 1nsw B: [92098]
    mutant
  3. Domain d1nswc_: 1nsw C: [92099]
    mutant
  4. Domain d1nswd_: 1nsw D: [92100]
    mutant
2. Domains for 1nw2:
  1. Domain d1nw2a_: 1nw2 A: [92215]
    complexed with act, cac, zn; mutant
  2. Domain d1nw2b_: 1nw2 B: [92216]
    complexed with act, cac, zn; mutant
  3. Domain d1nw2c_: 1nw2 C: [92217]
    complexed with act, cac, zn; mutant
  4. Domain d1nw2d_: 1nw2 D: [92218]
    complexed with act, cac, zn; mutant
  5. Domain d1nw2e_: 1nw2 E: [92219]
    complexed with act, cac, zn; mutant
  6. Domain d1nw2f_: 1nw2 F: [92220]
    complexed with act, cac, zn; mutant
  7. Domain d1nw2g_: 1nw2 G: [92221]
    complexed with act, cac, zn; mutant
  8. Domain d1nw2h_: 1nw2 H: [92222]
    complexed with act, cac, zn; mutant
3. Domain for 1quw:
  - Domain d1quwa_: 1quw A: [32735]
4. Domain for 1rqm:
  - Domain d1rqma_: 1rqm A: [105068]
    mutant
Escherichia coli [TaxId:562] [52836] (44 PDB entries)
Uniprot P00274 ! Uniprot P00581
1. Domains for 1f6m:
  1. Domain d1f6mc_: 1f6m C: [32725]
    Other proteins in same PDB: d1f6ma1, d1f6ma2, d1f6mb1, d1f6mb2, d1f6me1, d1f6me2, d1f6mf1, d1f6mf2
    protein/RNA complex; complexed with 3aa, fad
  2. Domain d1f6md_: 1f6m D: [32726]
    Other proteins in same PDB: d1f6ma1, d1f6ma2, d1f6mb1, d1f6mb2, d1f6me1, d1f6me2, d1f6mf1, d1f6mf2
    protein/RNA complex; complexed with 3aa, fad
  3. Domain d1f6mg_: 1f6m G: [32727]
    Other proteins in same PDB: d1f6ma1, d1f6ma2, d1f6mb1, d1f6mb2, d1f6me1, d1f6me2, d1f6mf1, d1f6mf2
    protein/RNA complex; complexed with 3aa, fad
  4. Domain d1f6mh_: 1f6m H: [32728]
    Other proteins in same PDB: d1f6ma1, d1f6ma2, d1f6mb1, d1f6mb2, d1f6me1, d1f6me2, d1f6mf1, d1f6mf2
    protein/RNA complex; complexed with 3aa, fad
2. Domains for 1keb:
  1. Domain d1keba_: 1keb A: [77341]
    complexed with cu; mutant
  2. Domain d1kebb_: 1keb B: [77342]
    complexed with cu; mutant
3. Domains for 1oaz:
  1. Domain d1oaza_: 1oaz A: [92741]
    Other proteins in same PDB: d1oazh_, d1oazj_, d1oazl_, d1oazn_
    insertion mutant
  2. Domain d1oazb_: 1oaz B: [92742]
    Other proteins in same PDB: d1oazh_, d1oazj_, d1oazl_, d1oazn_
    insertion mutant
4. Domain for 1skr:
  - Domain d1skrb_: 1skr B: [105686]
    Other proteins in same PDB: d1skra1, d1skra2
    protein/DNA complex; complexed with dad, mg
5. Domain for 1sks:
  - Domain d1sksb_: 1sks B: [105689]
    Other proteins in same PDB: d1sksa1, d1sksa2
    protein/DNA complex; complexed with mg
6. Domain for 1skw:
  - Domain d1skwb_: 1skw B: [105696]
    Other proteins in same PDB: d1skwa1, d1skwa2
    protein/DNA complex; complexed with mg
7. Domains for 1sl0:
  1. Domain d1sl0b_: 1sl0 B: [105699]
    Other proteins in same PDB: d1sl0a1, d1sl0a2, d1sl0c1, d1sl0c2
    protein/DNA complex; complexed with dad, mg
  2. Domain d1sl0d_: 1sl0 D: [105702]
    Other proteins in same PDB: d1sl0a1, d1sl0a2, d1sl0c1, d1sl0c2
    protein/DNA complex; complexed with dad, mg
8. Domain for 1sl1:
  - Domain d1sl1b_: 1sl1 B: [105705]
    Other proteins in same PDB: d1sl1a1, d1sl1a2
    protein/DNA complex; complexed with mg
9. Domain for 1sl2:
  - Domain d1sl2b_: 1sl2 B: [105708]
    Other proteins in same PDB: d1sl2a1, d1sl2a2
    protein/DNA complex; complexed with dad, mg
10. Domain for 1srx:
  - Domain d1srxa_: 1srx A: [32729]
    CA-atoms only
11. Domain for 1t7p:
  - Domain d1t7pb_: 1t7p B: [32723]
    Other proteins in same PDB: d1t7pa1, d1t7pa2
    protein/DNA complex; complexed with dg3, mg
12. Domain for 1t8e:
  - Domain d1t8eb_: 1t8e B: [112318]
    Other proteins in same PDB: d1t8ea1, d1t8ea2
    protein/DNA complex; complexed with dct, mes, mg, pg4, so4
13. Domain for 1tho:
  - Domain d1thoa_: 1tho A: [32722]
    complexed with cu; mutant
14. Domain for 1tk0:
  - Domain d1tk0b_: 1tk0 B: [107065]
    Other proteins in same PDB: d1tk0a1, d1tk0a2
    protein/DNA complex; complexed with 1pe, dct, mes, mg, so4
15. Domain for 1tk5:
  - Domain d1tk5b_: 1tk5 B: [107076]
    Other proteins in same PDB: d1tk5a1, d1tk5a2
    protein/DNA complex; complexed with 1pe, mes, mg, so4
16. Domain for 1tk8:
  - Domain d1tk8b_: 1tk8 B: [107081]
    Other proteins in same PDB: d1tk8a1, d1tk8a2
    protein/DNA complex; complexed with 1pe, d3t, mes, mg, so4
17. Domain for 1tkd:
  - Domain d1tkdb_: 1tkd B: [107088]
    Other proteins in same PDB: d1tkda1, d1tkda2
    protein/DNA complex; complexed with 1pe, d3t, mes, mg, so4
18. Domain for 1txx:
  - Domain d1txxa_: 1txx A: [32724]
    active-site variant
    complexed with cu
19. Domain for 1x9m:
  - Domain d1x9mb_: 1x9m B: [115001]
    Other proteins in same PDB: d1x9ma1, d1x9ma2
    protein/DNA complex; complexed with mg
20. Domain for 1x9s:
  - Domain d1x9sb_: 1x9s B: [115007]
    Other proteins in same PDB: d1x9sa1, d1x9sa2
    protein/DNA complex; complexed with mg
21. Domain for 1x9w:
  - Domain d1x9wb_: 1x9w B: [115010]
    Other proteins in same PDB: d1x9wa1, d1x9wa2
    protein/DNA complex; complexed with mg
22. Domain for 1xoa:
  - Domain d1xoaa_: 1xoa A: [32731]
23. Domain for 1xob:
  - Domain d1xoba_: 1xob A: [90400]
24. Domains for 1zcp:
  1. Domain d1zcpa_: 1zcp A: [162445]
    automated match to d1f6mc_
    mutant
  2. Domain d1zcpb_: 1zcp B: [162446]
    automated match to d1f6mc_
    mutant
  3. Domain d1zcpc_: 1zcp C: [162447]
    automated match to d1f6mc_
    mutant
  4. Domain d1zcpd_: 1zcp D: [162448]
    automated match to d1f6mc_
    mutant
25. Domain for 1zyq:
  - Domain d1zyqb_: 1zyq B: [125848]
    Other proteins in same PDB: d1zyqa1, d1zyqa2
    automated match to d1xoa__
    protein/DNA complex; complexed with dad, mg
26. Domains for 1zzy:
  1. Domain d1zzya_: 1zzy A: [162639]
    automated match to d1xoaa_
    mutant
  2. Domain d1zzyb_: 1zzy B: [162640]
    automated match to d1xoaa_
    mutant
27. Domains for 2ajq:
  1. Domain d2ajqb_: 2ajq B: [126890]
    automated match to d1xoa__
    protein/DNA complex
  2. Domain d2ajqi_: 2ajq I: [126891]
    automated match to d1xoa__
    protein/DNA complex
28. Domain for 2bto:
  - Domain d2btot_: 2bto T: [129156]
    Other proteins in same PDB: d2btoa1, d2btoa2, d2btob1, d2btob2
    automated match to d1xoa__
    complexed with gtp
29. Domain for 2eio:
  - Domain d2eiod_: 2eio D: [164050]
    automated match to d1xoaa_
30. Domains for 2eiq:
  1. Domain d2eiqa_: 2eiq A: [164051]
    automated match to d1xoaa_
    complexed with cu, mpd
  2. Domain d2eiqb_: 2eiq B: [164052]
    automated match to d1xoaa_
    complexed with cu, mpd
31. Domains for 2fch:
  1. Domain d2fcha_: 2fch A: [164324]
    automated match to d1xoaa_
    complexed with mpd; mutant
  2. Domain d2fchb_: 2fch B: [164325]
    automated match to d1xoaa_
    complexed with mpd; mutant
  3. Domain d2fchc_: 2fch C: [164326]
    automated match to d1xoaa_
    complexed with mpd; mutant
  4. Domain d2fchd_: 2fch D: [164327]
    automated match to d1xoaa_
    complexed with mpd; mutant
  5. Domain d2fche_: 2fch E: [164328]
    automated match to d1xoaa_
    complexed with mpd; mutant
  6. Domain d2fchf_: 2fch F: [164329]
    automated match to d1xoaa_
    complexed with mpd; mutant
  7. Domain d2fchg_: 2fch G: [164330]
    automated match to d1xoaa_
    complexed with mpd; mutant
32. Domains for 2fd3:
  1. Domain d2fd3a_: 2fd3 A: [164331]
    automated match to d1xoaa_
    mutant
  2. Domain d2fd3b_: 2fd3 B: [164332]
    automated match to d1xoaa_
    mutant
33. Domains for 2h6x:
  1. Domain d2h6xa_: 2h6x A: [136205]
    automated match to d1xoa__
    complexed with mpd
  2. Domain d2h6xb_: 2h6x B: [136206]
    automated match to d1xoa__
    complexed with mpd
34. Domains for 2h6y:
  1. Domain d2h6ya_: 2h6y A: [164984]
    automated match to d1xoaa_
    complexed with mpd; mutant
  2. Domain d2h6yb_: 2h6y B: [164985]
    automated match to d1xoaa_
    complexed with mpd; mutant
35. Domains for 2h6z:
  1. Domain d2h6za_: 2h6z A: [164986]
    automated match to d1xoaa_
    complexed with mpd; mutant
  2. Domain d2h6zb_: 2h6z B: [164987]
    automated match to d1xoaa_
    complexed with mpd; mutant
36. Domains for 2h70:
  1. Domain d2h70a_: 2h70 A: [164988]
    automated match to d1xoaa_
    complexed with mpd; mutant
  2. Domain d2h70b_: 2h70 B: [164989]
    automated match to d1xoaa_
    complexed with mpd; mutant
37. Domains for 2h71:
  1. Domain d2h71a_: 2h71 A: [164990]
    automated match to d1xoaa_
    complexed with mpd; mutant
  2. Domain d2h71b_: 2h71 B: [164991]
    automated match to d1xoaa_
    complexed with mpd; mutant
38. Domains for 2h72:
  1. Domain d2h72a_: 2h72 A: [164992]
    automated match to d1xoaa_
    complexed with mpd; mutant
  2. Domain d2h72b_: 2h72 B: [164993]
    automated match to d1xoaa_
    complexed with mpd; mutant
39. Domains for 2h73:
  1. Domain d2h73a_: 2h73 A: [164994]
    automated match to d1xoaa_
    complexed with mpd; mutant
  2. Domain d2h73b_: 2h73 B: [164995]
    automated match to d1xoaa_
    complexed with mpd; mutant
40. Domains for 2h74:
  1. Domain d2h74a_: 2h74 A: [164996]
    automated match to d1xoaa_
    complexed with mpd; mutant
  2. Domain d2h74b_: 2h74 B: [164997]
    automated match to d1xoaa_
    complexed with mpd; mutant
41. Domains for 2h75:
  1. Domain d2h75a_: 2h75 A: [164998]
    automated match to d1xoaa_
    complexed with mpd; mutant
  2. Domain d2h75b_: 2h75 B: [164999]
    automated match to d1xoaa_
    complexed with mpd; mutant
42. Domains for 2h76:
  1. Domain d2h76a_: 2h76 A: [165000]
    automated match to d1xoaa_
    complexed with mpd; mutant
  2. Domain d2h76b_: 2h76 B: [165001]
    automated match to d1xoaa_
    complexed with mpd; mutant
43. Domain for 2tir:
  - Domain d2tira_: 2tir A: [32721]
    complexed with cu; mutant
44. Domains for 2trx:
  1. Domain d2trxa_: 2trx A: [32719]
    complexed with cu, mpd
  2. Domain d2trxb_: 2trx B: [32720]
    complexed with cu, mpd
European aspen (Populus tremula), thioredoxin H [TaxId:113636] [117590] (1 PDB entry)
Uniprot Q8S3L3
- Domain for 1ti3:
  - Domain d1ti3a_: 1ti3 A: [112429]
Fruit fly (Drosophila melanogaster) [TaxId:7227] [117589] (4 PDB entries)
Uniprot Q9V429
1. Domains for 1xw9:
  1. Domain d1xw9a_: 1xw9 A: [116112]
  2. Domain d1xw9b_: 1xw9 B: [116113]
  3. Domain d1xw9c_: 1xw9 C: [116114]
  4. Domain d1xw9d_: 1xw9 D: [116115]
2. Domains for 1xwa:
  1. Domain d1xwaa_: 1xwa A: [116116]
    complexed with cd, cl
  2. Domain d1xwab_: 1xwa B: [116117]
    complexed with cd, cl
  3. Domain d1xwac_: 1xwa C: [116118]
    complexed with cd, cl
  4. Domain d1xwad_: 1xwa D: [116119]
    complexed with cd, cl
3. Domains for 1xwb:
  1. Domain d1xwba_: 1xwb A: [116120]
    complexed with cd
  2. Domain d1xwbb_: 1xwb B: [116121]
    complexed with cd
  3. Domain d1xwbc_: 1xwb C: [116122]
    complexed with cd
  4. Domain d1xwbd_: 1xwb D: [116123]
    complexed with cd
4. Domain for 1xwc:
  - Domain d1xwca_: 1xwc A: [116124]
Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [52838] (4 PDB entries)
1. Domain for 1dby:
  - Domain d1dbya_: 1dby A: [32734]
2. Domains for 1ep7:
  1. Domain d1ep7a_: 1ep7 A: [64905]
  2. Domain d1ep7b_: 1ep7 B: [64906]
3. Domains for 1ep8:
  1. Domain d1ep8a_: 1ep8 A: [64907]
  2. Domain d1ep8b_: 1ep8 B: [64908]
4. Domain for 1tof:
  - Domain d1tofa_: 1tof A: [32733]
Human (Homo sapiens) [TaxId:9606] [52842] (25 PDB entries)
1. Domain for 1aiu:
  - Domain d1aiua_: 1aiu A: [32746]
    mutant
2. Domain for 1auc:
  - Domain d1auca_: 1auc A: [32747]
3. Domain for 1cqg:
  - Domain d1cqga_: 1cqg A: [32756]
    mutant
4. Domain for 1cqh:
  - Domain d1cqha_: 1cqh A: [32749]
    mutant
5. Domain for 1ert:
  - Domain d1erta_: 1ert A: [32744]
6. Domain for 1eru:
  - Domain d1erua_: 1eru A: [32748]
7. Domain for 1erv:
  - Domain d1erva_: 1erv A: [32743]
    mutant
8. Domain for 1erw:
  - Domain d1erwa_: 1erw A: [32745]
    mutant
9. Domain for 1m7t:
  - Domain d1m7ta_: 1m7t A: [78745]
    human-escherichia coli thioredoxin chimera
10. Domain for 1mdi:
  - Domain d1mdia_: 1mdi A: [32755]
    mutant
11. Domain for 1mdj:
  - Domain d1mdja_: 1mdj A: [32751]
    mutant
12. Domain for 1mdk:
  - Domain d1mdka_: 1mdk A: [32752]
    mutant
13. Domain for 1trs:
  - Domain d1trsa_: 1trs A: [32753]
14. Domain for 1tru:
  - Domain d1trua_: 1tru A: [32758]
15. Domain for 1trv:
  - Domain d1trva_: 1trv A: [32759]
16. Domain for 1trw:
  - Domain d1trwa_: 1trw A: [32750]
17. Domain for 2hsh:
  - Domain d2hsha_: 2hsh A: [136724]
    automated match to d1erv__
    complexed with po4; mutant
18. Domains for 2hxk:
  1. Domain d2hxka_: 2hxk A: [136853]
    automated match to d1auc__
    complexed with eoh
  2. Domain d2hxkb_: 2hxk B: [136854]
    automated match to d1auc__
    complexed with eoh
  3. Domain d2hxkc_: 2hxk C: [136855]
    automated match to d1auc__
    complexed with eoh
19. Domains for 2ifq:
  1. Domain d2ifqa_: 2ifq A: [137343]
    automated match to d1auc__
    complexed with eoh
  2. Domain d2ifqb_: 2ifq B: [137344]
    automated match to d1auc__
    complexed with eoh
  3. Domain d2ifqc_: 2ifq C: [137345]
    automated match to d1auc__
    complexed with eoh
20. Domain for 2iiy:
  - Domain d2iiya_: 2iiy A: [137443]
    automated match to d1auc__
21. Domains for 3e3e:
  1. Domain d3e3ea_: 3e3e A: [174584]
    automated match to d1erva_
    complexed with p6g; mutant
  2. Domain d3e3eb_: 3e3e B: [174585]
    automated match to d1erva_
    complexed with p6g; mutant
22. Domains for 3m9j:
  1. Domain d3m9ja_: 3m9j A: [180972]
    automated match to d1erva_
    mutant
  2. Domain d3m9jb_: 3m9j B: [180973]
    automated match to d1erva_
    mutant
23. Domains for 3m9k:
  1. Domain d3m9ka_: 3m9k A: [180974]
    automated match to d1erva_
    complexed with d1d, so4; mutant
  2. Domain d3m9kb_: 3m9k B: [180975]
    automated match to d1erva_
    complexed with d1d, so4; mutant
24. Domain for 3trx:
  - Domain d3trxa_: 3trx A: [32757]
25. Domain for 4trx:
  - Domain d4trxa_: 4trx A: [32754]
Malarial parasite (Plasmodium falciparum) [TaxId:5833] [102431] (1 PDB entry)
- Domains for 1syr:
  1. Domain d1syra_: 1syr A: [99028]
    structural genomics
  2. Domain d1syrb_: 1syr B: [99029]
    structural genomics
  3. Domain d1syrc_: 1syr C: [99030]
    structural genomics
  4. Domain d1syrd_: 1syr D: [99031]
    structural genomics
  5. Domain d1syre_: 1syr E: [99032]
    structural genomics
  6. Domain d1syrf_: 1syr F: [99033]
    structural genomics
  7. Domain d1syrg_: 1syr G: [99034]
    structural genomics
  8. Domain d1syrh_: 1syr H: [99035]
    structural genomics
  9. Domain d1syri_: 1syr I: [99036]
    structural genomics
  10. Domain d1syrj_: 1syr J: [99037]
    structural genomics
  11. Domain d1syrk_: 1syr K: [99038]
    structural genomics
  12. Domain d1syrl_: 1syr L: [99039]
    structural genomics
Nostoc sp. PCC 7120 [TaxId:103690] [52837] (1 PDB entry)
thioredoxin H
- Domain for 1thx:
  - Domain d1thxa_: 1thx A: [32732]
Spinach (Spinacia oleracea), thioredoxin F [TaxId:3562] [52840] (2 PDB entries)
1. Domains for 1f9m:
  1. Domain d1f9ma_: 1f9m A: [32736]
    short form
  2. Domain d1f9mb_: 1f9m B: [32737]
    short form
2. Domain for 1faa:
  - Domain d1faaa_: 1faa A: [32738]
    long form
Spinach (Spinacia oleracea), thioredoxin M [TaxId:3562] [52841] (3 PDB entries)
1. Domains for 1fb0:
  1. Domain d1fb0a_: 1fb0 A: [32741]
  2. Domain d1fb0b_: 1fb0 B: [32742]
2. Domains for 1fb6:
  1. Domain d1fb6a_: 1fb6 A: [32739]
  2. Domain d1fb6b_: 1fb6 B: [32740]
3. Domain for 1gl8:
  - Domain d1gl8a_: 1gl8 A: [65290]
Staphylococcus aureus [TaxId:1280] [187358] (5 PDB entries)
1. Domain for 2o7k:
  - Domain d2o7ka_: 2o7k A: [166570]
    automated match to d1nswa_
2. Domain for 2o85:
  - Domain d2o85a_: 2o85 A: [166581]
    automated match to d1nswa_
    mutant
3. Domain for 2o87:
  - Domain d2o87a_: 2o87 A: [166582]
    automated match to d1nswa_
    mutant
4. Domain for 2o89:
  - Domain d2o89a_: 2o89 A: [166583]
    automated match to d1nswa_
    mutant
5. Domains for 3die:
  1. Domain d3diea_: 3die A: [173978]
    automated match to d1nswa_
    complexed with cd, fe; mutant
  2. Domain d3dieb_: 3die B: [173979]
    automated match to d1nswa_
    complexed with cd, fe; mutant
Thale cress (Arabidopsis thaliana) [TaxId:3702] [110603] (1 PDB entry)
Uniprot P29448 #
- Domain for 1xfl:
  - Domain d1xfla_: 1xfl A: [109586]
    Structural genomics target
Trichomonas vaginalis [TaxId:5722] [187687] (1 PDB entry)
- Domains for 2f51:
  1. Domain d2f51a_: 2f51 A: [164269]
    automated match to d1syra_
  2. Domain d2f51b_: 2f51 B: [164270]
    automated match to d1syra_
Trypanosome (Trypanosoma brucei) [TaxId:5691] [102430] (1 PDB entry)
- Domain for 1r26:
  - Domain d1r26a_: 1r26 A: [96847]

More info for Protein Thioredoxin from c.47.1.1: Thioltransferase

Timeline for Protein Thioredoxin from c.47.1.1: Thioltransferase:

Protein Thioredoxin from c.47.1.1: Thioltransferase first appeared (with stable ids) in SCOP 1.55
Protein Thioredoxin from c.47.1.1: Thioltransferase appears in SCOP 1.75
Protein Thioredoxin from c.47.1.1: Thioltransferase appears in SCOPe 2.02
Protein Thioredoxin from c.47.1.1: Thioltransferase appears in the current release, SCOPe 2.08