SCOPe 2.05: Family c.47.1.1: Thioltransferase

Lineage for Family c.47.1.1: Thioltransferase

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.47: Thioredoxin fold [52832] (2 superfamilies)
   core: 3 layers, a/b/a; mixed beta-sheet of 4 strands, order 4312; strand 3 is antiparallel to the rest

4. Superfamily c.47.1: Thioredoxin-like [52833] (24 families)

5. Family c.47.1.1: Thioltransferase [52834] (16 proteins)

Proteins:

1. Bacterocin transport accessory protein Bta [142355] (1 species)

   • Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [142356] (1 PDB entry)
     Uniprot Q97PU4 1-115

2. C-terminal, Grx domain of Hybrid-Prx5 [89700] (1 species)

   • Species Haemophilus influenzae [TaxId:727] [89701] (1 PDB entry)
     HI0572

3. Glutaredoxin (Grx, thioltransferase) [52843] (5 species)

   1. Species Bacteriophage T4 [TaxId:10665] [52844] (4 PDB entries)

   2. Species Escherichia coli [TaxId:562] [52845] (4 PDB entries)

   3. Species Escherichia coli, Grx3 [TaxId:562] [52846] (2 PDB entries)

   4. Species Human (Homo sapiens) [TaxId:9606] [52848] (2 PDB entries)

   5. Species Pig (Sus scrofa) [TaxId:9823] [52847] (1 PDB entry)

4. Glutaredoxin-like NRDH-redoxin [64052] (3 species)

   1. Species Corynebacterium ammoniagenes [TaxId:1697] [102432] (1 PDB entry)

   2. Species Corynebacterium glutamicum [TaxId:1718] [193169] (1 PDB entry)

   3. Species Escherichia coli [TaxId:562] [64053] (1 PDB entry)

5. Hypothetical protein PA1234 [142353] (1 species)

   • Species Pseudomonas aeruginosa [TaxId:287] [142354] (1 PDB entry)
     Uniprot Q9I4A4 1-166

6. Hypothetical protein XCC2852 [110606] (1 species)

   • Species Xanthomonas campestris [TaxId:339] [110607] (2 PDB entries)
     Uniprot Q8P6W3

7. MJ0307, thioredoxin/glutaredoxin-like protein [64054] (1 species)
   single-domain PDI

   • Species Methanococcus jannaschii [TaxId:2190] [64055] (1 PDB entry)

8. MTH807, thioredoxin/glutaredoxin-like protein [102433] (1 species)
   behaves as true thioredoxin; probable MJ0307 ortholog

   • Species Methanobacterium thermoautotrophicum [TaxId:145262] [102434] (1 PDB entry)

9. MTH985, a thioredoxin [69512] (1 species)

   • Species Methanobacterium thermoautotrophicum [TaxId:145262] [69513] (1 PDB entry)

10. Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) [102435] (2 species)

    1. Species Escherichia coli [TaxId:316407] [186806] (1 PDB entry)

    2. Species Escherichia coli [TaxId:562] [102436] (5 PDB entries)

11. Thioredoxin [52835] (15 species)

    1. Species Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId:405212] [52839] (4 PDB entries)
       Uniprot P80579

    2. Species Escherichia coli [TaxId:562] [52836] (48 PDB entries)
       Uniprot P00274 ! Uniprot P00581

    3. Species European aspen (Populus tremula), thioredoxin H [TaxId:113636] [117590] (1 PDB entry)
       Uniprot Q8S3L3

    4. Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [117589] (4 PDB entries)
       Uniprot Q9V429

    5. Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [52838] (4 PDB entries)

    6. Species Human (Homo sapiens) [TaxId:9606] [52842] (30 PDB entries)

    7. Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [102431] (1 PDB entry)

    8. Species Nostoc sp. PCC 7120 [TaxId:103690] [52837] (1 PDB entry)
       thioredoxin H

    9. Species Plasmodium falciparum [TaxId:36329] [227500] (4 PDB entries)

    10. Species Spinach (Spinacia oleracea), thioredoxin F [TaxId:3562] [52840] (2 PDB entries)

    11. Species Spinach (Spinacia oleracea), thioredoxin M [TaxId:3562] [52841] (3 PDB entries)

    12. Species Staphylococcus aureus [TaxId:1280] [187358] (5 PDB entries)

    13. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [110603] (1 PDB entry)
        Uniprot P29448 #

    14. Species Trichomonas vaginalis [TaxId:5722] [187687] (1 PDB entry)

    15. Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [102430] (1 PDB entry)

12. Thioredoxin-like protein 2 [117591] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [117592] (1 PDB entry)
      Uniprot Q9CQM9 241-336

13. Thioredoxin-like protein p19, TLP19 [110604] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [110605] (1 PDB entry)
      Uniprot O95881 23-172

14. Thioredoxin-like protein, N-terminal domain [64056] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [64057] (1 PDB entry)

15. Thioredoxin-like structure containing protein C330018D20Rik [117593] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [117594] (1 PDB entry)
      Uniprot Q9CWB7 21-107

16. automated matches [190442] (13 species)
    not a true protein

    1. Species Acetobacter aceti [TaxId:435] [187839] (1 PDB entry)

    2. Species Artificial gene [TaxId:32630] [189470] (1 PDB entry)

    3. Species Bacillus subtilis [TaxId:1423] [255197] (3 PDB entries)

    4. Species Escherichia coli K-12 [TaxId:83333] [188760] (4 PDB entries)

    5. Species Escherichia coli [TaxId:562] [187670] (1 PDB entry)

    6. Species Escherichia coli [TaxId:83334] [279735] (1 PDB entry)

    7. Species Hordeum vulgare [TaxId:112509] [188425] (2 PDB entries)

    8. Species Human (Homo sapiens) [TaxId:9606] [189547] (7 PDB entries)

    9. Species Mycobacterium tuberculosis [TaxId:1773] [226696] (2 PDB entries)

    10. Species Mycobacterium tuberculosis [TaxId:83332] [197006] (1 PDB entry)

    11. Species Pacific white shrimp (Litopenaeus vannamei) [TaxId:6689] [197071] (7 PDB entries)

    12. Species Rice (Oryza sativa) [TaxId:4530] [254945] (1 PDB entry)

    13. Species Spinach (Spinacia oleracea) [TaxId:3562] [187345] (2 PDB entries)

More info for Family c.47.1.1: Thioltransferase

Timeline for Family c.47.1.1: Thioltransferase:

• Family c.47.1.1: Thioltransferase first appeared (with stable ids) in SCOP 1.55
  
• Family c.47.1.1: Thioltransferase appears in SCOPe 2.04
  
• Family c.47.1.1: Thioltransferase appears in SCOPe 2.06
  
• Family c.47.1.1: Thioltransferase appears in the current release, SCOPe 2.08