SCOP 1.63: Species: Desulfovibrio africanus

Lineage for Species: Desulfovibrio africanus

Root: SCOP 1.63
Class c: Alpha and beta proteins (a/b) [51349] (117 folds)
Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465

Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (4 families)

both pyridine (Pyr)- and pyrophosphate (PP)-binding modules have this fold
conserved core consists of two Pyr and two PP-modules and binds two coenzyme molecules

Family c.36.1.4: Pyruvate-ferredoxin oxidoreductase, PFOR, domains I and VI [52536] (1 protein)
domains VI, I and II are arranged in the same way as the TK PP, Pyr and C domains
Protein Pyruvate-ferredoxin oxidoreductase, PFOR, domains I and VI [52537] (1 species)
domain I is the Pyr module; domain VI is the PP module
Species Desulfovibrio africanus [TaxId:873] [52538] (3 PDB entries)

PDB entries in Species: Desulfovibrio africanus:

Domain(s) for 1b0p:
1. Domain d1b0pa1: 1b0p A:2-258 [31831]
  Other proteins in same PDB: d1b0pa3, d1b0pa4, d1b0pa5, d1b0pb3, d1b0pb4, d1b0pb5
2. Domain d1b0pa2: 1b0p A:786-1232 [31832]
  Other proteins in same PDB: d1b0pa3, d1b0pa4, d1b0pa5, d1b0pb3, d1b0pb4, d1b0pb5
3. Domain d1b0pb1: 1b0p B:2-258 [31833]
  Other proteins in same PDB: d1b0pa3, d1b0pa4, d1b0pa5, d1b0pb3, d1b0pb4, d1b0pb5
4. Domain d1b0pb2: 1b0p B:786-1232 [31834]
  Other proteins in same PDB: d1b0pa3, d1b0pa4, d1b0pa5, d1b0pb3, d1b0pb4, d1b0pb5
  complexed with ca, fs4, mg, tpp
Domain(s) for 1kek:
1. Domain d1keka1: 1kek A:2-258 [68524]
  Other proteins in same PDB: d1keka3, d1keka4, d1keka5, d1kekb3, d1kekb4, d1kekb5
2. Domain d1keka2: 1kek A:786-1232 [68525]
  Other proteins in same PDB: d1keka3, d1keka4, d1keka5, d1kekb3, d1kekb4, d1kekb5
3. Domain d1kekb1: 1kek B:2-258 [68529]
  Other proteins in same PDB: d1keka3, d1keka4, d1keka5, d1kekb3, d1kekb4, d1kekb5
4. Domain d1kekb2: 1kek B:786-1232 [68530]
  Other proteins in same PDB: d1keka3, d1keka4, d1keka5, d1kekb3, d1kekb4, d1kekb5
  complexed with ca, co2, fs4, htl, mg
Domain(s) for 2pda:
1. Domain d2pdaa1: 2pda A:2-258 [31835]
  Other proteins in same PDB: d2pdaa3, d2pdaa4, d2pdaa5, d2pdab3, d2pdab4, d2pdab5
2. Domain d2pdaa2: 2pda A:786-1232 [31836]
  Other proteins in same PDB: d2pdaa3, d2pdaa4, d2pdaa5, d2pdab3, d2pdab4, d2pdab5
3. Domain d2pdab1: 2pda B:2-258 [31837]
  Other proteins in same PDB: d2pdaa3, d2pdaa4, d2pdaa5, d2pdab3, d2pdab4, d2pdab5
4. Domain d2pdab2: 2pda B:786-1232 [31838]
  Other proteins in same PDB: d2pdaa3, d2pdaa4, d2pdaa5, d2pdab3, d2pdab4, d2pdab5
  complexed with ca, fs4, mg, pyr, tpp

More info for Species Desulfovibrio africanus [TaxId:873] from c.36.1.4 Pyruvate-ferredoxin oxidoreductase, PFOR, domains I and VI

Timeline for Species Desulfovibrio africanus [TaxId:873] from c.36.1.4 Pyruvate-ferredoxin oxidoreductase, PFOR, domains I and VI:

Species Desulfovibrio africanus [TaxId:873] from c.36.1.4 Pyruvate-ferredoxin oxidoreductase, PFOR, domains I and VI first appeared (with stable ids) in SCOP 1.55
Species Desulfovibrio africanus [TaxId:873] from c.36.1.4 Pyruvate-ferredoxin oxidoreductase, PFOR, domains I and VI appears in SCOP 1.61
Species Desulfovibrio africanus [TaxId:873] from c.36.1.4 Pyruvate-ferredoxin oxidoreductase, PFOR, domains I and VI does not appear in SCOP 1.65