SCOPe 2.08: Protein: Catalase, C-terminal domain

Lineage for Protein: Catalase, C-terminal domain

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345

Superfamily c.23.16: Class I glutamine amidotransferase-like [52317] (10 families)

(S)

conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures

Family c.23.16.3: Catalase, C-terminal domain [52328] (1 protein)
Protein Catalase, C-terminal domain [52329] (2 species)

Species:

Escherichia coli, HPII [TaxId:562] [52330] (17 PDB entries)
1. Domains for 1cf9:
  1. Domain d1cf9a1: 1cf9 A:598-753 [31441]
    Other proteins in same PDB: d1cf9a2, d1cf9b2, d1cf9c2, d1cf9d2
    complexed with hem; mutant
  2. Domain d1cf9b1: 1cf9 B:598-753 [31442]
    Other proteins in same PDB: d1cf9a2, d1cf9b2, d1cf9c2, d1cf9d2
    complexed with hem; mutant
  3. Domain d1cf9c1: 1cf9 C:598-753 [31443]
    Other proteins in same PDB: d1cf9a2, d1cf9b2, d1cf9c2, d1cf9d2
    complexed with hem; mutant
  4. Domain d1cf9d1: 1cf9 D:598-753 [31444]
    Other proteins in same PDB: d1cf9a2, d1cf9b2, d1cf9c2, d1cf9d2
    complexed with hem; mutant
2. Domains for 1gg9:
  1. Domain d1gg9a1: 1gg9 A:598-753 [31445]
    Other proteins in same PDB: d1gg9a2, d1gg9b2, d1gg9c2, d1gg9d2
    complexed with hem
  2. Domain d1gg9b1: 1gg9 B:598-753 [31446]
    Other proteins in same PDB: d1gg9a2, d1gg9b2, d1gg9c2, d1gg9d2
    complexed with hem
  3. Domain d1gg9c1: 1gg9 C:598-753 [31447]
    Other proteins in same PDB: d1gg9a2, d1gg9b2, d1gg9c2, d1gg9d2
    complexed with hem
  4. Domain d1gg9d1: 1gg9 D:598-753 [31448]
    Other proteins in same PDB: d1gg9a2, d1gg9b2, d1gg9c2, d1gg9d2
    complexed with hem
3. Domains for 1gge:
  1. Domain d1ggea1: 1gge A:598-753 [31449]
    Other proteins in same PDB: d1ggea2, d1ggeb2, d1ggec2, d1gged2
    complexed with hdd
  2. Domain d1ggeb1: 1gge B:598-753 [31450]
    Other proteins in same PDB: d1ggea2, d1ggeb2, d1ggec2, d1gged2
    complexed with hdd
  3. Domain d1ggec1: 1gge C:598-753 [31451]
    Other proteins in same PDB: d1ggea2, d1ggeb2, d1ggec2, d1gged2
    complexed with hdd
  4. Domain d1gged1: 1gge D:598-753 [31452]
    Other proteins in same PDB: d1ggea2, d1ggeb2, d1ggec2, d1gged2
    complexed with hdd
4. Domains for 1ggf:
  1. Domain d1ggfa1: 1ggf A:598-753 [31469]
    Other proteins in same PDB: d1ggfa2, d1ggfb2, d1ggfc2, d1ggfd2
    complexed with hem, peo
  2. Domain d1ggfb1: 1ggf B:598-753 [31470]
    Other proteins in same PDB: d1ggfa2, d1ggfb2, d1ggfc2, d1ggfd2
    complexed with hem, peo
  3. Domain d1ggfc1: 1ggf C:598-753 [31471]
    Other proteins in same PDB: d1ggfa2, d1ggfb2, d1ggfc2, d1ggfd2
    complexed with hem, peo
  4. Domain d1ggfd1: 1ggf D:598-753 [31472]
    Other proteins in same PDB: d1ggfa2, d1ggfb2, d1ggfc2, d1ggfd2
    complexed with hem, peo
5. Domains for 1ggh:
  1. Domain d1ggha1: 1ggh A:598-753 [31465]
    Other proteins in same PDB: d1ggha2, d1gghb2, d1gghc2, d1gghd2
    complexed with hem
  2. Domain d1gghb1: 1ggh B:598-753 [31466]
    Other proteins in same PDB: d1ggha2, d1gghb2, d1gghc2, d1gghd2
    complexed with hem
  3. Domain d1gghc1: 1ggh C:598-753 [31467]
    Other proteins in same PDB: d1ggha2, d1gghb2, d1gghc2, d1gghd2
    complexed with hem
  4. Domain d1gghd1: 1ggh D:598-753 [31468]
    Other proteins in same PDB: d1ggha2, d1gghb2, d1gghc2, d1gghd2
    complexed with hem
6. Domains for 1ggj:
  1. Domain d1ggja1: 1ggj A:598-753 [31457]
    Other proteins in same PDB: d1ggja2, d1ggjb2, d1ggjc2, d1ggjd2
    complexed with hdd
  2. Domain d1ggjb1: 1ggj B:598-753 [31458]
    Other proteins in same PDB: d1ggja2, d1ggjb2, d1ggjc2, d1ggjd2
    complexed with hdd
  3. Domain d1ggjc1: 1ggj C:598-753 [31459]
    Other proteins in same PDB: d1ggja2, d1ggjb2, d1ggjc2, d1ggjd2
    complexed with hdd
  4. Domain d1ggjd1: 1ggj D:598-753 [31460]
    Other proteins in same PDB: d1ggja2, d1ggjb2, d1ggjc2, d1ggjd2
    complexed with hdd
7. Domains for 1ggk:
  1. Domain d1ggka1: 1ggk A:598-753 [31453]
    Other proteins in same PDB: d1ggka2, d1ggkb2, d1ggkc2, d1ggkd2
    complexed with hem
  2. Domain d1ggkb1: 1ggk B:598-753 [31454]
    Other proteins in same PDB: d1ggka2, d1ggkb2, d1ggkc2, d1ggkd2
    complexed with hem
  3. Domain d1ggkc1: 1ggk C:598-753 [31455]
    Other proteins in same PDB: d1ggka2, d1ggkb2, d1ggkc2, d1ggkd2
    complexed with hem
  4. Domain d1ggkd1: 1ggk D:598-753 [31456]
    Other proteins in same PDB: d1ggka2, d1ggkb2, d1ggkc2, d1ggkd2
    complexed with hem
8. Domains for 1iph:
  1. Domain d1ipha1: 1iph A:598-753 [31473]
    Other proteins in same PDB: d1ipha2, d1iphb2, d1iphc2, d1iphd2
    complexed with hem
  2. Domain d1iphb1: 1iph B:598-753 [31474]
    Other proteins in same PDB: d1ipha2, d1iphb2, d1iphc2, d1iphd2
    complexed with hem
  3. Domain d1iphc1: 1iph C:598-753 [31475]
    Other proteins in same PDB: d1ipha2, d1iphb2, d1iphc2, d1iphd2
    complexed with hem
  4. Domain d1iphd1: 1iph D:598-753 [31476]
    Other proteins in same PDB: d1ipha2, d1iphb2, d1iphc2, d1iphd2
    complexed with hem
9. Domains for 1p7y:
  1. Domain d1p7ya1: 1p7y A:598-753 [94321]
    Other proteins in same PDB: d1p7ya2, d1p7yb2, d1p7yc2, d1p7yd2
    complexed with hem
  2. Domain d1p7yb1: 1p7y B:598-753 [94323]
    Other proteins in same PDB: d1p7ya2, d1p7yb2, d1p7yc2, d1p7yd2
    complexed with hem
  3. Domain d1p7yc1: 1p7y C:598-753 [94325]
    Other proteins in same PDB: d1p7ya2, d1p7yb2, d1p7yc2, d1p7yd2
    complexed with hem
  4. Domain d1p7yd1: 1p7y D:598-753 [94327]
    Other proteins in same PDB: d1p7ya2, d1p7yb2, d1p7yc2, d1p7yd2
    complexed with hem
10. Domains for 1p7z:
  1. Domain d1p7za1: 1p7z A:598-753 [94329]
    Other proteins in same PDB: d1p7za2, d1p7zb2, d1p7zc2, d1p7zd2
    complexed with hem
  2. Domain d1p7zb1: 1p7z B:598-753 [94331]
    Other proteins in same PDB: d1p7za2, d1p7zb2, d1p7zc2, d1p7zd2
    complexed with hem
  3. Domain d1p7zc1: 1p7z C:598-753 [94333]
    Other proteins in same PDB: d1p7za2, d1p7zb2, d1p7zc2, d1p7zd2
    complexed with hem
  4. Domain d1p7zd1: 1p7z D:598-753 [94335]
    Other proteins in same PDB: d1p7za2, d1p7zb2, d1p7zc2, d1p7zd2
    complexed with hem
11. Domains for 1p80:
  1. Domain d1p80a1: 1p80 A:598-753 [94337]
    Other proteins in same PDB: d1p80a2, d1p80b2, d1p80c2, d1p80d2
    complexed with hem
  2. Domain d1p80b1: 1p80 B:598-753 [94339]
    Other proteins in same PDB: d1p80a2, d1p80b2, d1p80c2, d1p80d2
    complexed with hem
  3. Domain d1p80c1: 1p80 C:598-753 [94341]
    Other proteins in same PDB: d1p80a2, d1p80b2, d1p80c2, d1p80d2
    complexed with hem
  4. Domain d1p80d1: 1p80 D:598-753 [94343]
    Other proteins in same PDB: d1p80a2, d1p80b2, d1p80c2, d1p80d2
    complexed with hem
12. Domains for 1p81:
  1. Domain d1p81a1: 1p81 A:598-753 [94345]
    Other proteins in same PDB: d1p81a2, d1p81b2, d1p81c2, d1p81d2
    complexed with hdd
  2. Domain d1p81b1: 1p81 B:598-753 [94347]
    Other proteins in same PDB: d1p81a2, d1p81b2, d1p81c2, d1p81d2
    complexed with hdd
  3. Domain d1p81c1: 1p81 C:598-753 [94349]
    Other proteins in same PDB: d1p81a2, d1p81b2, d1p81c2, d1p81d2
    complexed with hdd
  4. Domain d1p81d1: 1p81 D:598-753 [94351]
    Other proteins in same PDB: d1p81a2, d1p81b2, d1p81c2, d1p81d2
    complexed with hdd
13. Domains for 1qf7:
  1. Domain d1qf7a1: 1qf7 A:598-753 [31461]
    Other proteins in same PDB: d1qf7a2, d1qf7b2, d1qf7c2, d1qf7d2
    complexed with hem; mutant
  2. Domain d1qf7b1: 1qf7 B:598-753 [31462]
    Other proteins in same PDB: d1qf7a2, d1qf7b2, d1qf7c2, d1qf7d2
    complexed with hem; mutant
  3. Domain d1qf7c1: 1qf7 C:598-753 [31463]
    Other proteins in same PDB: d1qf7a2, d1qf7b2, d1qf7c2, d1qf7d2
    complexed with hem; mutant
  4. Domain d1qf7d1: 1qf7 D:598-753 [31464]
    Other proteins in same PDB: d1qf7a2, d1qf7b2, d1qf7c2, d1qf7d2
    complexed with hem; mutant
14. Domains for 1qws:
  1. Domain d1qwsa1: 1qws A:598-753 [96493]
    Other proteins in same PDB: d1qwsa2, d1qwsb2, d1qwsc2, d1qwsd2
    complexed with hem
  2. Domain d1qwsb1: 1qws B:598-753 [96495]
    Other proteins in same PDB: d1qwsa2, d1qwsb2, d1qwsc2, d1qwsd2
    complexed with hem
  3. Domain d1qwsc1: 1qws C:598-753 [96497]
    Other proteins in same PDB: d1qwsa2, d1qwsb2, d1qwsc2, d1qwsd2
    complexed with hem
  4. Domain d1qwsd1: 1qws D:598-753 [96499]
    Other proteins in same PDB: d1qwsa2, d1qwsb2, d1qwsc2, d1qwsd2
    complexed with hem
15. Domain for 3vu3:
  - Domain d3vu3a2: 3vu3 A:598-753 [229174]
    Other proteins in same PDB: d3vu3a1, d3vu3c_, d3vu3d_, d3vu3e_, d3vu3f_, d3vu3g_, d3vu3h_
    automated match to d1ggea1
    protein/RNA complex; complexed with hem
16. Domains for 4bfl:
  1. Domain d4bfla2: 4bfl A:598-753 [234154]
    Other proteins in same PDB: d4bfla1, d4bflb1, d4bflc1, d4bfld1
    automated match to d4bfld2
    complexed with edo, hem
  2. Domain d4bflb2: 4bfl B:598-753 [234156]
    Other proteins in same PDB: d4bfla1, d4bflb1, d4bflc1, d4bfld1
    automated match to d4bfld2
    complexed with edo, hem
  3. Domain d4bflc2: 4bfl C:598-753 [234158]
    Other proteins in same PDB: d4bfla1, d4bflb1, d4bflc1, d4bfld1
    automated match to d4bfld2
    complexed with edo, hem
  4. Domain d4bfld2: 4bfl D:598-753 [219465]
    Other proteins in same PDB: d4bfla1, d4bflb1, d4bflc1, d4bfld1
    automated match to d1ggea1
    complexed with edo, hem
17. Domains for 6by0:
  1. Domain d6by0a2: 6by0 A:598-753 [349900]
    Other proteins in same PDB: d6by0a1, d6by0b1, d6by0c1, d6by0d1
    automated match to d1ggea1
    complexed with hem
  2. Domain d6by0b2: 6by0 B:598-753 [349909]
    Other proteins in same PDB: d6by0a1, d6by0b1, d6by0c1, d6by0d1
    automated match to d1ggea1
    complexed with hem
  3. Domain d6by0c2: 6by0 C:598-753 [350131]
    Other proteins in same PDB: d6by0a1, d6by0b1, d6by0c1, d6by0d1
    automated match to d1ggea1
    complexed with hem
  4. Domain d6by0d2: 6by0 D:598-753 [349912]
    Other proteins in same PDB: d6by0a1, d6by0b1, d6by0c1, d6by0d1
    automated match to d1ggea1
    complexed with hem
Fungus (Neurospora crassa) [TaxId:5141] [117483] (1 PDB entry)
Uniprot Q9C168 68-765
- Domains for 1sy7:
  1. Domain d1sy7a1: 1sy7 A:553-736 [112161]
    complexed with hdd, hem
  2. Domain d1sy7b1: 1sy7 B:553-736 [112162]
    complexed with hdd, hem

More info for Protein Catalase, C-terminal domain from c.23.16.3: Catalase, C-terminal domain

Timeline for Protein Catalase, C-terminal domain from c.23.16.3: Catalase, C-terminal domain:

Protein Catalase, C-terminal domain from c.23.16.3: Catalase, C-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein Catalase, C-terminal domain from c.23.16.3: Catalase, C-terminal domain appears in SCOPe 2.07