SCOPe 2.06: Protein: Sarcosine oxidase

Lineage for Protein: Sarcosine oxidase

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.3: FAD/NAD(P)-binding domain [51904] (1 superfamily)
core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
Superfamily c.3.1: FAD/NAD(P)-binding domain [51905] (9 families)
Family c.3.1.2: FAD-linked reductases, N-terminal domain [51913] (18 proteins)
C-terminal domain is alpha+beta is common for the family
Protein Sarcosine oxidase [51920] (1 species)

Species:

Bacillus sp., strain b0618 [TaxId:1409] [51921] (17 PDB entries)
1. Domains for 1el5:
  1. Domain d1el5a1: 1el5 A:1-217,A:322-385 [30369]
    Other proteins in same PDB: d1el5a2, d1el5b2
    complexed with cl, dmg, fad, po4
  2. Domain d1el5b1: 1el5 B:1-217,B:322-385 [30370]
    Other proteins in same PDB: d1el5a2, d1el5b2
    complexed with cl, dmg, fad, po4
2. Domains for 1el7:
  1. Domain d1el7a1: 1el7 A:1-217,A:322-385 [30371]
    Other proteins in same PDB: d1el7a2, d1el7b2
    complexed with cl, fad, mtd, po4, te
  2. Domain d1el7b1: 1el7 B:1-217,B:322-385 [30372]
    Other proteins in same PDB: d1el7a2, d1el7b2
    complexed with cl, fad, mtd, po4, te
3. Domains for 1el8:
  1. Domain d1el8a1: 1el8 A:1-217,A:322-385 [30373]
    Other proteins in same PDB: d1el8a2, d1el8b2
    complexed with cl, fad, msf, po4
  2. Domain d1el8b1: 1el8 B:1-217,B:322-385 [30374]
    Other proteins in same PDB: d1el8a2, d1el8b2
    complexed with cl, fad, msf, po4
4. Domains for 1el9:
  1. Domain d1el9a1: 1el9 A:1-217,A:322-385 [30377]
    Other proteins in same PDB: d1el9a2, d1el9b2
    complexed with cl, fad, mtg, po4
  2. Domain d1el9b1: 1el9 B:1-217,B:322-385 [30378]
    Other proteins in same PDB: d1el9a2, d1el9b2
    complexed with cl, fad, mtg, po4
5. Domains for 1eli:
  1. Domain d1elia1: 1eli A:1-217,A:322-385 [30375]
    Other proteins in same PDB: d1elia2, d1elib2
    complexed with cl, fad, po4, pyc
  2. Domain d1elib1: 1eli B:1-217,B:322-385 [30376]
    Other proteins in same PDB: d1elia2, d1elib2
    complexed with cl, fad, po4, pyc
6. Domains for 1l9c:
  1. Domain d1l9ca1: 1l9c A:1-217,A:322-385 [77815]
    Other proteins in same PDB: d1l9ca2, d1l9cb2
    complexed with cl, fad, po4
  2. Domain d1l9cb1: 1l9c B:1-217,B:322-385 [77817]
    Other proteins in same PDB: d1l9ca2, d1l9cb2
    complexed with cl, fad, po4
7. Domains for 1l9d:
  1. Domain d1l9da1: 1l9d A:1-217,A:322-385 [77819]
    Other proteins in same PDB: d1l9da2, d1l9db2
    complexed with cl, fad, pyc
  2. Domain d1l9db1: 1l9d B:1-217,B:322-385 [77821]
    Other proteins in same PDB: d1l9da2, d1l9db2
    complexed with cl, fad, pyc
8. Domains for 1l9e:
  1. Domain d1l9ea1: 1l9e A:1-217,A:322-385 [77823]
    Other proteins in same PDB: d1l9ea2, d1l9eb2
    complexed with cl, fad, imd
  2. Domain d1l9eb1: 1l9e B:1-217,B:322-385 [77825]
    Other proteins in same PDB: d1l9ea2, d1l9eb2
    complexed with cl, fad, imd
9. Domain for 1l9f:
  - Domain d1l9fb3: 1l9f B:1-217,B:322-389 [302666]
    Other proteins in same PDB: d1l9fb4
    automated match to d1l9ea1
    complexed with cl, fad, po4
10. Domains for 2a89:
  1. Domain d2a89a1: 2a89 A:1-217,A:322-385 [126393]
    Other proteins in same PDB: d2a89a2, d2a89b2
    automated match to d1l9ea1
    complexed with cl, fcg, po4
  2. Domain d2a89b1: 2a89 B:1-217,B:322-385 [126395]
    Other proteins in same PDB: d2a89a2, d2a89b2
    automated match to d1l9ea1
    complexed with cl, fcg, po4
11. Domains for 2gb0:
  1. Domain d2gb0a1: 2gb0 A:1-217,A:322-387 [134899]
    Other proteins in same PDB: d2gb0a2, d2gb0b2
    automated match to d1l9ea1
    complexed with cl, fad, po4
  2. Domain d2gb0b1: 2gb0 B:1-217,B:322-389 [134901]
    Other proteins in same PDB: d2gb0a2, d2gb0b2
    automated match to d1l9ea1
    complexed with cl, fad, po4
12. Domains for 2gf3:
  1. Domain d2gf3a1: 2gf3 A:1-217,A:322-385 [135070]
    Other proteins in same PDB: d2gf3a2, d2gf3b2
    automated match to d1l9ea1
    complexed with cl, fad, foa, gol, po4
  2. Domain d2gf3b1: 2gf3 B:1-217,B:322-385 [135072]
    Other proteins in same PDB: d2gf3a2, d2gf3b2
    automated match to d1l9ea1
    complexed with cl, fad, foa, gol, po4
13. Domains for 3bhf:
  1. Domain d3bhfa1: 3bhf A:1-217,A:322-381 [155265]
    Other proteins in same PDB: d3bhfa2, d3bhfb2
    automatically matched to d1el5a1
    complexed with cl, fad; mutant
  2. Domain d3bhfb1: 3bhf B:1-217,B:322-381 [155267]
    Other proteins in same PDB: d3bhfa2, d3bhfb2
    automatically matched to d1el5a1
    complexed with cl, fad; mutant
14. Domains for 3bhk:
  1. Domain d3bhka1: 3bhk A:1-217,A:322-381 [155271]
    Other proteins in same PDB: d3bhka2, d3bhkb2
    automatically matched to d1el5a1
    complexed with cl, fad, gol; mutant
  2. Domain d3bhkb1: 3bhk B:1-217,B:322-381 [155273]
    Other proteins in same PDB: d3bhka2, d3bhkb2
    automatically matched to d1el5a1
    complexed with cl, fad, gol; mutant
15. Domains for 3qse:
  1. Domain d3qsea1: 3qse A:1-217,A:322-385 [215391]
    Other proteins in same PDB: d3qsea2, d3qseb2
    automated match to d1l9ea1
    complexed with cl, fad, sar
  2. Domain d3qseb1: 3qse B:1-217,B:322-382 [215393]
    Other proteins in same PDB: d3qsea2, d3qseb2
    automated match to d1l9ea1
    complexed with cl, fad, sar
16. Domains for 3qsm:
  1. Domain d3qsma1: 3qsm A:1-217,A:322-387 [215395]
    Other proteins in same PDB: d3qsma2, d3qsmb2
    automated match to d1l9ea1
    complexed with cl, fad
  2. Domain d3qsmb1: 3qsm B:1-217,B:322-387 [215397]
    Other proteins in same PDB: d3qsma2, d3qsmb2
    automated match to d1l9ea1
    complexed with cl, fad
17. Domains for 3qss:
  1. Domain d3qssa1: 3qss A:1-217,A:322-383 [215399]
    Other proteins in same PDB: d3qssa2, d3qssb2
    automated match to d1l9ea1
    complexed with cl, fad, mtg
  2. Domain d3qssb1: 3qss B:1-217,B:322-383 [215401]
    Other proteins in same PDB: d3qssa2, d3qssb2
    automated match to d1l9ea1
    complexed with cl, fad, mtg

More info for Protein Sarcosine oxidase from c.3.1.2: FAD-linked reductases, N-terminal domain

Timeline for Protein Sarcosine oxidase from c.3.1.2: FAD-linked reductases, N-terminal domain:

Protein Sarcosine oxidase from c.3.1.2: FAD-linked reductases, N-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein Sarcosine oxidase from c.3.1.2: FAD-linked reductases, N-terminal domain appears in SCOPe 2.05
Protein Sarcosine oxidase from c.3.1.2: FAD-linked reductases, N-terminal domain appears in SCOPe 2.07
Protein Sarcosine oxidase from c.3.1.2: FAD-linked reductases, N-terminal domain appears in the current release, SCOPe 2.08