Lineage for Protein: Glutamate dehydrogenase

  1. Root: SCOP 1.63
  2. 235644Class c: Alpha and beta proteins (a/b) [51349] (117 folds)
  3. 238223Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 238224Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (10 families) (S)
  5. 239294Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (8 proteins)
    extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site
  6. 239295Protein Glutamate dehydrogenase [51884] (7 species)

Species:

  1. 239296Archaeon Pyrococcus furiosus [TaxId:2261] [51886] (1 PDB entry)
  2. 239300Archaeon Thermococcus litoralis [TaxId:2265] [51887] (1 PDB entry)
  3. 239307Archaeon Thermococcus profundus [TaxId:49899] [63943] (1 PDB entry)
  4. 239314Clostridium symbiosum [TaxId:1512] [51885] (4 PDB entries)
    1. Domain for 1aup:
    2. Domain for 1bgv:
    3. Domains for 1hrd:
      1. 239317Domain d1hrda1: 1hrd A:195-449 [30219]
        Other proteins in same PDB: d1hrda2, d1hrdb2, d1hrdc2
      2. 239318Domain d1hrdb1: 1hrd B:195-449 [30220]
        Other proteins in same PDB: d1hrda2, d1hrdb2, d1hrdc2
      3. 239319Domain d1hrdc1: 1hrd C:195-449 [30221]
        Other proteins in same PDB: d1hrda2, d1hrdb2, d1hrdc2
    4. Domain for 1k89:
  5. 239321Cow (Bos taurus) [TaxId:9913] [51889] (3 PDB entries)
    1. Domains for 1hwx:
      1. 239322Domain d1hwxa1: 1hwx A:209-501 [30250]
        Other proteins in same PDB: d1hwxa2, d1hwxb2, d1hwxc2, d1hwxd2, d1hwxe2, d1hwxf2
      2. 239323Domain d1hwxb1: 1hwx B:209-501 [30251]
        Other proteins in same PDB: d1hwxa2, d1hwxb2, d1hwxc2, d1hwxd2, d1hwxe2, d1hwxf2
      3. 239324Domain d1hwxc1: 1hwx C:209-501 [30252]
        Other proteins in same PDB: d1hwxa2, d1hwxb2, d1hwxc2, d1hwxd2, d1hwxe2, d1hwxf2
      4. 239325Domain d1hwxd1: 1hwx D:209-501 [30253]
        Other proteins in same PDB: d1hwxa2, d1hwxb2, d1hwxc2, d1hwxd2, d1hwxe2, d1hwxf2
      5. 239326Domain d1hwxe1: 1hwx E:209-501 [30254]
        Other proteins in same PDB: d1hwxa2, d1hwxb2, d1hwxc2, d1hwxd2, d1hwxe2, d1hwxf2
      6. 239327Domain d1hwxf1: 1hwx F:209-501 [30255]
        Other proteins in same PDB: d1hwxa2, d1hwxb2, d1hwxc2, d1hwxd2, d1hwxe2, d1hwxf2
        complexed with glu, gtp, nai
    2. Domains for 1hwy:
      1. 239334Domain d1hwya1: 1hwy A:209-501 [30262]
        Other proteins in same PDB: d1hwya2, d1hwyb2, d1hwyc2, d1hwyd2, d1hwye2, d1hwyf2
      2. 239335Domain d1hwyb1: 1hwy B:209-501 [30263]
        Other proteins in same PDB: d1hwya2, d1hwyb2, d1hwyc2, d1hwyd2, d1hwye2, d1hwyf2
      3. 239336Domain d1hwyc1: 1hwy C:209-501 [30264]
        Other proteins in same PDB: d1hwya2, d1hwyb2, d1hwyc2, d1hwyd2, d1hwye2, d1hwyf2
      4. 239337Domain d1hwyd1: 1hwy D:209-501 [30265]
        Other proteins in same PDB: d1hwya2, d1hwyb2, d1hwyc2, d1hwyd2, d1hwye2, d1hwyf2
      5. 239338Domain d1hwye1: 1hwy E:209-501 [30266]
        Other proteins in same PDB: d1hwya2, d1hwyb2, d1hwyc2, d1hwyd2, d1hwye2, d1hwyf2
      6. 239339Domain d1hwyf1: 1hwy F:209-501 [30267]
        Other proteins in same PDB: d1hwya2, d1hwyb2, d1hwyc2, d1hwyd2, d1hwye2, d1hwyf2
        complexed with akg, nad, po4
    3. Domains for 1hwz:
      1. 239328Domain d1hwza1: 1hwz A:209-501 [30256]
        Other proteins in same PDB: d1hwza2, d1hwzb2, d1hwzc2, d1hwzd2, d1hwze2, d1hwzf2
      2. 239329Domain d1hwzb1: 1hwz B:209-501 [30257]
        Other proteins in same PDB: d1hwza2, d1hwzb2, d1hwzc2, d1hwzd2, d1hwze2, d1hwzf2
      3. 239330Domain d1hwzc1: 1hwz C:209-501 [30258]
        Other proteins in same PDB: d1hwza2, d1hwzb2, d1hwzc2, d1hwzd2, d1hwze2, d1hwzf2
      4. 239331Domain d1hwzd1: 1hwz D:209-501 [30259]
        Other proteins in same PDB: d1hwza2, d1hwzb2, d1hwzc2, d1hwzd2, d1hwze2, d1hwzf2
      5. 239332Domain d1hwze1: 1hwz E:209-501 [30260]
        Other proteins in same PDB: d1hwza2, d1hwzb2, d1hwzc2, d1hwzd2, d1hwze2, d1hwzf2
      6. 239333Domain d1hwzf1: 1hwz F:209-501 [30261]
        Other proteins in same PDB: d1hwza2, d1hwzb2, d1hwzc2, d1hwzd2, d1hwze2, d1hwzf2
        complexed with glu, gtp, ndp
  6. 239340Human (Homo sapiens) [TaxId:9606] [75115] (1 PDB entry)
  7. 239347Thermotoga maritima [TaxId:243274] [51888] (3 PDB entries)
    1. Domains for 1b26:
      1. 239348Domain d1b26a1: 1b26 A:179-412 [30232]
        Other proteins in same PDB: d1b26a2, d1b26b2, d1b26c2, d1b26d2, d1b26e2, d1b26f2
      2. 239349Domain d1b26b1: 1b26 B:179-412 [30233]
        Other proteins in same PDB: d1b26a2, d1b26b2, d1b26c2, d1b26d2, d1b26e2, d1b26f2
      3. 239350Domain d1b26c1: 1b26 C:179-412 [30234]
        Other proteins in same PDB: d1b26a2, d1b26b2, d1b26c2, d1b26d2, d1b26e2, d1b26f2
      4. 239351Domain d1b26d1: 1b26 D:179-412 [30235]
        Other proteins in same PDB: d1b26a2, d1b26b2, d1b26c2, d1b26d2, d1b26e2, d1b26f2
      5. 239352Domain d1b26e1: 1b26 E:179-412 [30236]
        Other proteins in same PDB: d1b26a2, d1b26b2, d1b26c2, d1b26d2, d1b26e2, d1b26f2
      6. 239353Domain d1b26f1: 1b26 F:179-412 [30237]
        Other proteins in same PDB: d1b26a2, d1b26b2, d1b26c2, d1b26d2, d1b26e2, d1b26f2
    2. Domains for 1b3b:
      1. 239360Domain d1b3ba1: 1b3b A:179-412 [30244]
        Other proteins in same PDB: d1b3ba2, d1b3bb2, d1b3bc2, d1b3bd2, d1b3be2, d1b3bf2
      2. 239361Domain d1b3bb1: 1b3b B:179-412 [30245]
        Other proteins in same PDB: d1b3ba2, d1b3bb2, d1b3bc2, d1b3bd2, d1b3be2, d1b3bf2
      3. 239362Domain d1b3bc1: 1b3b C:179-412 [30246]
        Other proteins in same PDB: d1b3ba2, d1b3bb2, d1b3bc2, d1b3bd2, d1b3be2, d1b3bf2
      4. 239363Domain d1b3bd1: 1b3b D:179-412 [30247]
        Other proteins in same PDB: d1b3ba2, d1b3bb2, d1b3bc2, d1b3bd2, d1b3be2, d1b3bf2
      5. 239364Domain d1b3be1: 1b3b E:179-412 [30248]
        Other proteins in same PDB: d1b3ba2, d1b3bb2, d1b3bc2, d1b3bd2, d1b3be2, d1b3bf2
      6. 239365Domain d1b3bf1: 1b3b F:179-412 [30249]
        Other proteins in same PDB: d1b3ba2, d1b3bb2, d1b3bc2, d1b3bd2, d1b3be2, d1b3bf2
    3. Domains for 2tmg:
      1. 239354Domain d2tmga1: 2tmg A:179-411 [30238]
        Other proteins in same PDB: d2tmga2, d2tmgb2, d2tmgc2, d2tmgd2, d2tmge2, d2tmgf2
      2. 239355Domain d2tmgb1: 2tmg B:179-411 [30239]
        Other proteins in same PDB: d2tmga2, d2tmgb2, d2tmgc2, d2tmgd2, d2tmge2, d2tmgf2
      3. 239356Domain d2tmgc1: 2tmg C:179-411 [30240]
        Other proteins in same PDB: d2tmga2, d2tmgb2, d2tmgc2, d2tmgd2, d2tmge2, d2tmgf2
      4. 239357Domain d2tmgd1: 2tmg D:179-411 [30241]
        Other proteins in same PDB: d2tmga2, d2tmgb2, d2tmgc2, d2tmgd2, d2tmge2, d2tmgf2
      5. 239358Domain d2tmge1: 2tmg E:179-411 [30242]
        Other proteins in same PDB: d2tmga2, d2tmgb2, d2tmgc2, d2tmgd2, d2tmge2, d2tmgf2
      6. 239359Domain d2tmgf1: 2tmg F:179-411 [30243]
        Other proteins in same PDB: d2tmga2, d2tmgb2, d2tmgc2, d2tmgd2, d2tmge2, d2tmgf2

More info for Protein Glutamate dehydrogenase from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain

Timeline for Protein Glutamate dehydrogenase from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain: