SCOP 1.67: Species: Rat (Rattus norvegicus)

Lineage for Species: Rat (Rattus norvegicus)

Root: SCOP 1.67
Class c: Alpha and beta proteins (a/b) [51349] (130 folds)

Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (11 families)
Family c.2.1.4: Formate/glycerate dehydrogenases, NAD-domain [51830] (10 proteins)
this domain interrupts the other domain which defines family
Protein S-adenosylhomocystein hydrolase [51845] (2 species)
Species Rat (Rattus norvegicus) [TaxId:10116] [51847] (6 PDB entries)

PDB entries in Species: Rat (Rattus norvegicus):

Domain(s) for 1b3r:
1. Domain d1b3ra1: 1b3r A:190-352 [30106]
  Other proteins in same PDB: d1b3ra2, d1b3rb2, d1b3rc2, d1b3rd2
2. Domain d1b3rb1: 1b3r B:190-352 [30107]
  Other proteins in same PDB: d1b3ra2, d1b3rb2, d1b3rc2, d1b3rd2
3. Domain d1b3rc1: 1b3r C:190-352 [30108]
  Other proteins in same PDB: d1b3ra2, d1b3rb2, d1b3rc2, d1b3rd2
4. Domain d1b3rd1: 1b3r D:190-352 [30109]
  Other proteins in same PDB: d1b3ra2, d1b3rb2, d1b3rc2, d1b3rd2
  complexed with nad; mutant
Domain(s) for 1d4f:
1. Domain d1d4fa1: 1d4f A:190-352 [30110]
  Other proteins in same PDB: d1d4fa2, d1d4fb2, d1d4fc2, d1d4fd2
2. Domain d1d4fb1: 1d4f B:190-352 [30111]
  Other proteins in same PDB: d1d4fa2, d1d4fb2, d1d4fc2, d1d4fd2
3. Domain d1d4fc1: 1d4f C:190-352 [30112]
  Other proteins in same PDB: d1d4fa2, d1d4fb2, d1d4fc2, d1d4fd2
4. Domain d1d4fd1: 1d4f D:190-352 [30113]
  Other proteins in same PDB: d1d4fa2, d1d4fb2, d1d4fc2, d1d4fd2
  complexed with adn, nad; mutant
Domain(s) for 1d4g:
1. Domain d1d4ga1: 1d4g A:190-352 [30114]
  Other proteins in same PDB: d1d4ga2, d1d4gb2, d1d4gc2, d1d4gd2, d1d4ge2, d1d4gf2, d1d4gg2, d1d4gh2
2. Domain d1d4gb1: 1d4g B:190-352 [30115]
  Other proteins in same PDB: d1d4ga2, d1d4gb2, d1d4gc2, d1d4gd2, d1d4ge2, d1d4gf2, d1d4gg2, d1d4gh2
3. Domain d1d4gc1: 1d4g C:190-352 [30116]
  Other proteins in same PDB: d1d4ga2, d1d4gb2, d1d4gc2, d1d4gd2, d1d4ge2, d1d4gf2, d1d4gg2, d1d4gh2
4. Domain d1d4gd1: 1d4g D:190-352 [30117]
  Other proteins in same PDB: d1d4ga2, d1d4gb2, d1d4gc2, d1d4gd2, d1d4ge2, d1d4gf2, d1d4gg2, d1d4gh2
5. Domain d1d4ge1: 1d4g E:190-352 [30118]
  Other proteins in same PDB: d1d4ga2, d1d4gb2, d1d4gc2, d1d4gd2, d1d4ge2, d1d4gf2, d1d4gg2, d1d4gh2
6. Domain d1d4gf1: 1d4g F:190-352 [30119]
  Other proteins in same PDB: d1d4ga2, d1d4gb2, d1d4gc2, d1d4gd2, d1d4ge2, d1d4gf2, d1d4gg2, d1d4gh2
7. Domain d1d4gg1: 1d4g G:190-352 [30120]
  Other proteins in same PDB: d1d4ga2, d1d4gb2, d1d4gc2, d1d4gd2, d1d4ge2, d1d4gf2, d1d4gg2, d1d4gh2
8. Domain d1d4gh1: 1d4g H:190-352 [30121]
  Other proteins in same PDB: d1d4ga2, d1d4gb2, d1d4gc2, d1d4gd2, d1d4ge2, d1d4gf2, d1d4gg2, d1d4gh2
  complexed with dea, nad
Domain(s) for 1k0u:
1. Domain d1k0ua1: 1k0u A:190-352 [67970]
  Other proteins in same PDB: d1k0ua2, d1k0ub2, d1k0uc2, d1k0ud2, d1k0ue2, d1k0uf2, d1k0ug2, d1k0uh2
2. Domain d1k0ub1: 1k0u B:190-352 [67972]
  Other proteins in same PDB: d1k0ua2, d1k0ub2, d1k0uc2, d1k0ud2, d1k0ue2, d1k0uf2, d1k0ug2, d1k0uh2
3. Domain d1k0uc1: 1k0u C:190-352 [67974]
  Other proteins in same PDB: d1k0ua2, d1k0ub2, d1k0uc2, d1k0ud2, d1k0ue2, d1k0uf2, d1k0ug2, d1k0uh2
4. Domain d1k0ud1: 1k0u D:190-352 [67976]
  Other proteins in same PDB: d1k0ua2, d1k0ub2, d1k0uc2, d1k0ud2, d1k0ue2, d1k0uf2, d1k0ug2, d1k0uh2
5. Domain d1k0ue1: 1k0u E:190-352 [67978]
  Other proteins in same PDB: d1k0ua2, d1k0ub2, d1k0uc2, d1k0ud2, d1k0ue2, d1k0uf2, d1k0ug2, d1k0uh2
6. Domain d1k0uf1: 1k0u F:190-352 [67980]
  Other proteins in same PDB: d1k0ua2, d1k0ub2, d1k0uc2, d1k0ud2, d1k0ue2, d1k0uf2, d1k0ug2, d1k0uh2
7. Domain d1k0ug1: 1k0u G:190-352 [67982]
  Other proteins in same PDB: d1k0ua2, d1k0ub2, d1k0uc2, d1k0ud2, d1k0ue2, d1k0uf2, d1k0ug2, d1k0uh2
8. Domain d1k0uh1: 1k0u H:190-352 [67984]
  Other proteins in same PDB: d1k0ua2, d1k0ub2, d1k0uc2, d1k0ud2, d1k0ue2, d1k0uf2, d1k0ug2, d1k0uh2
  complexed with dea, nad
Domain(s) for 1ky4:
1. Domain d1ky4a1: 1ky4 A:190-352 [77612]
  Other proteins in same PDB: d1ky4a2, d1ky4b2, d1ky4c2, d1ky4d2
2. Domain d1ky4b1: 1ky4 B:1190-1352 [77614]
  Other proteins in same PDB: d1ky4a2, d1ky4b2, d1ky4c2, d1ky4d2
3. Domain d1ky4c1: 1ky4 C:2190-2352 [77616]
  Other proteins in same PDB: d1ky4a2, d1ky4b2, d1ky4c2, d1ky4d2
4. Domain d1ky4d1: 1ky4 D:3190-3352 [77618]
  Other proteins in same PDB: d1ky4a2, d1ky4b2, d1ky4c2, d1ky4d2
  complexed with nad
Domain(s) for 1ky5:
1. Domain d1ky5a1: 1ky5 A:190-352 [77620]
  Other proteins in same PDB: d1ky5a2, d1ky5b2, d1ky5c2, d1ky5d2
2. Domain d1ky5b1: 1ky5 B:1190-1352 [77622]
  Other proteins in same PDB: d1ky5a2, d1ky5b2, d1ky5c2, d1ky5d2
3. Domain d1ky5c1: 1ky5 C:2190-2352 [77624]
  Other proteins in same PDB: d1ky5a2, d1ky5b2, d1ky5c2, d1ky5d2
4. Domain d1ky5d1: 1ky5 D:3190-3352 [77626]
  Other proteins in same PDB: d1ky5a2, d1ky5b2, d1ky5c2, d1ky5d2
  complexed with ady, nai; mutant

More info for Species Rat (Rattus norvegicus) [TaxId:10116] from c.2.1.4 S-adenosylhomocystein hydrolase

Timeline for Species Rat (Rattus norvegicus) [TaxId:10116] from c.2.1.4 S-adenosylhomocystein hydrolase:

Species Rat (Rattus norvegicus) [TaxId:10116] from c.2.1.4 S-adenosylhomocystein hydrolase first appeared (with stable ids) in SCOP 1.55
Species Rat (Rattus norvegicus) [TaxId:10116] from c.2.1.4 S-adenosylhomocystein hydrolase appears in SCOP 1.65
Species Rat (Rattus norvegicus) [TaxId:10116] from c.2.1.4 S-adenosylhomocystein hydrolase appears in SCOP 1.69
Species Rat (Rattus norvegicus) [TaxId:10116] from c.2.1.4 S-adenosylhomocystein hydrolase appears in the current release, SCOPe 2.08, called Species Norway rat (Rattus norvegicus) [TaxId:10116] from c.2.1.4 S-adenosylhomocystein hydrolase