Lineage for Family c.1.11.2: D-glucarate dehydratase-like

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1565956Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1573508Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families) (S)
    binds metal ion (magnesium or manganese) in conserved site inside barrel
    N-terminal alpha+beta domain is common to this superfamily
  5. 1573610Family c.1.11.2: D-glucarate dehydratase-like [51609] (14 proteins)

Proteins:

  1. 1573611beta-Methylaspartase [69400] (2 species)
    1. 1573612Species Citrobacter amalonaticus [TaxId:35703] [69402] (2 PDB entries)
    2. 1573617Species Clostridium tetanomorphum [TaxId:1553] [69401] (2 PDB entries)
  2. 1573622Chlormuconate cycloisomerase [51619] (2 species)
    1. 1573623Species Alcaligenes eutrophus [TaxId:106590] [51620] (1 PDB entry)
    2. 1573625Species Pseudomonas sp. p51 [TaxId:65067] [102096] (1 PDB entry)
  3. 1573627D-glucarate dehydratase [51610] (2 species)
    1. 1573628Species Escherichia coli [TaxId:562] [51612] (7 PDB entries)
    2. 1573653Species Pseudomonas putida [TaxId:303] [51611] (1 PDB entry)
  4. 1573655Hypothetical protein Atu3453 [102097] (1 species)
  5. 1573658Hypothetical protein Bll6730 [117384] (1 species)
  6. 1573662Hypothetical protein YitF [141844] (1 species)
  7. 1573674L-Ala-D/L-Glu epimerase [69397] (2 species)
    1. 1573675Species Bacillus subtilis [TaxId:1423] [69399] (2 PDB entries)
      Uniprot O34508
    2. 1573688Species Escherichia coli [TaxId:562] [69398] (1 PDB entry)
  8. 1573690Mandelate racemase [51617] (1 species)
  9. 1573698Muconate-lactonizing enzyme [51615] (1 species)
  10. 1573711N-acylamino acid racemase [110372] (4 species)
    1. 1573712Species Amycolatopsis sp. [TaxId:37632] [110373] (4 PDB entries)
      Uniprot Q44244 # similar activity to a remotely related O-succinylbenzoate synthase from E. coli
    2. 1573729Species Deinococcus radiodurans [TaxId:1299] [110374] (4 PDB entries)
      Uniprot Q9RYA6
    3. 1573746Species Enterococcus faecalis [TaxId:1351] [117382] (1 PDB entry)
      Uniprot Q838J7; EF0450; protein assignment by sequence similarity
    4. 1573749Species Listeria innocua [TaxId:1642] [117383] (1 PDB entry)
      Uniprot Q927X3; Lin2664; protein assignment by sequence similarity
  11. 1573752O-succinylbenzoate synthase [51613] (1 species)
  12. 1573761Putative dehydratase protein STM2273 [141846] (2 species)
    1. 1573762Species Salmonella enterica [TaxId:90371] [226347] (1 PDB entry)
    2. 1573771Species Salmonella typhimurium [TaxId:90371] [141847] (1 PDB entry)
      Uniprot Q8ZNH1 123-400
  13. 1573774RTS beta protein [117386] (1 species)
  14. 1573780automated matches [226997] (7 species)
    not a true protein
    1. 1573781Species Acidaminococcus sp. [TaxId:563191] [234735] (1 PDB entry)
    2. 1573784Species Actinobacillus succinogenes [TaxId:339671] [226437] (1 PDB entry)
    3. 1573789Species Agrobacterium tumefaciens [TaxId:176299] [226506] (4 PDB entries)
    4. Species Bradyrhizobium japonicum [TaxId:375] [255123] (2 PDB entries)
    5. 1573818Species Escherichia coli [TaxId:444449] [233282] (2 PDB entries)
    6. 1573824Species Pseudomonas putida [TaxId:303] [228631] (5 PDB entries)
    7. 1573837Species Salmonella typhimurium [TaxId:602] [225624] (1 PDB entry)

More info for Family c.1.11.2: D-glucarate dehydratase-like

Timeline for Family c.1.11.2: D-glucarate dehydratase-like: