SCOPe 2.06: Protein: Dihydrodipicolinate synthase

Lineage for Protein: Dihydrodipicolinate synthase

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.10: Aldolase [51569] (9 families)
Common fold covers whole protein structure

Family c.1.10.1: Class I aldolase [51570] (13 proteins)
the catalytic lysine forms schiff-base intermediate with substrate
possible link between the aldolase superfamily and the phosphate-binding beta/alpha barrels

Protein Dihydrodipicolinate synthase [51574] (13 species)

Species:

Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [141832] (2 PDB entries)
Uniprot Q81WN7 1-292
1. Domains for 1xky:
  1. Domain d1xkya1: 1xky A:1-292 [122094]
    complexed with k
  2. Domain d1xkyb_: 1xky B: [122095]
    automated match to d1xkya1
    complexed with k
  3. Domain d1xkyc_: 1xky C: [122096]
    automated match to d1xkya1
    complexed with k
  4. Domain d1xkyd_: 1xky D: [122097]
    automated match to d1xkya1
    complexed with k
2. Domains for 1xl9:
  1. Domain d1xl9a_: 1xl9 A: [122108]
    automated match to d1xkya1
  2. Domain d1xl9b_: 1xl9 B: [122109]
    automated match to d1xkya1
  3. Domain d1xl9c_: 1xl9 C: [122110]
    automated match to d1xkya1
  4. Domain d1xl9d_: 1xl9 D: [122111]
    automated match to d1xkya1
Campylobacter jejuni [TaxId:192222] [189204] (3 PDB entries)
1. Domains for 3ler:
  1. Domain d3lera_: 3ler A: [180235]
    automated match to d1o5ka_
    complexed with acy, edo, fmt, mg, peg
  2. Domain d3lerb_: 3ler B: [180236]
    automated match to d1o5ka_
    complexed with acy, edo, fmt, mg, peg
  3. Domain d3lerc_: 3ler C: [180237]
    automated match to d1o5ka_
    complexed with acy, edo, fmt, mg, peg
  4. Domain d3lerd_: 3ler D: [180238]
    automated match to d1o5ka_
    complexed with acy, edo, fmt, mg, peg
2. Domains for 5f1u:
  1. Domain d5f1ua_: 5f1u A: [313912]
    automated match to d3lera_
    complexed with 3vn, cl, edo, pg4, pge
  2. Domain d5f1ub_: 5f1u B: [313876]
    automated match to d3lera_
    complexed with 3vn, cl, edo, pg4, pge
  3. Domain d5f1uc_: 5f1u C: [313891]
    automated match to d3lera_
    complexed with 3vn, cl, edo, pg4, pge
  4. Domain d5f1ud_: 5f1u D: [313935]
    automated match to d3lera_
    complexed with 3vn, cl, edo, pg4, pge
3. Domains for 5f1v:
  1. Domain d5f1va_: 5f1v A: [313873]
    automated match to d3lera_
    complexed with 3vn, edo, gol, pge
  2. Domain d5f1vb_: 5f1v B: [313996]
    automated match to d3lera_
    complexed with 3vn, edo, gol, pge
  3. Domain d5f1vc_: 5f1v C: [314125]
    automated match to d3lera_
    complexed with 3vn, edo, gol, pge
  4. Domain d5f1vd_: 5f1v D: [314016]
    automated match to d3lera_
    complexed with 3vn, edo, gol, pge
Clostridium botulinum [TaxId:441770] [189380] (1 PDB entry)
- Domains for 3a5f:
  1. Domain d3a5fa_: 3a5f A: [171751]
    automated match to d1o5ka_
    complexed with gol
  2. Domain d3a5fb_: 3a5f B: [171752]
    automated match to d1o5ka_
    complexed with gol
Clostridium botulinum [TaxId:441771] [189048] (2 PDB entries)
1. Domain for 3bi8:
  - Domain d3bi8a_: 3bi8 A: [305092]
    automated match to d3irda_
    complexed with gol, mlt, na
2. Domain for 3ird:
  - Domain d3irda_: 3ird A: [178582]
    automated match to d1o5ka_
    complexed with cl, gol, mlt, na
Corynebacterium glutamicum [TaxId:1718] [188663] (1 PDB entry)
- Domains for 3cpr:
  1. Domain d3cpra1: 3cpr A:5-304 [173393]
    Other proteins in same PDB: d3cpra2, d3cprb2
    automated match to d1xxxb1
  2. Domain d3cprb1: 3cpr B:5-304 [173394]
    Other proteins in same PDB: d3cpra2, d3cprb2
    automated match to d1xxxb1
Escherichia coli K-12 [TaxId:83333] [188673] (3 PDB entries)
1. Domains for 3den:
  1. Domain d3dena_: 3den A: [173872]
    automated match to d1dhpa_
    complexed with gol, k, po4; mutant
  2. Domain d3denb_: 3den B: [173873]
    automated match to d1dhpa_
    complexed with gol, k, po4; mutant
2. Domains for 3i7r:
  1. Domain d3i7ra_: 3i7r A: [178135]
    automated match to d1dhpa_
    complexed with cl, gol, k, po4
  2. Domain d3i7rb_: 3i7r B: [178136]
    automated match to d1dhpa_
    complexed with cl, gol, k, po4
3. Domains for 3i7s:
  1. Domain d3i7sa_: 3i7s A: [178137]
    automated match to d1dhpa_
    complexed with gol, k, po4, pyr; mutant
  2. Domain d3i7sb_: 3i7s B: [178138]
    automated match to d1dhpa_
    complexed with gol, k, po4, pyr; mutant
Escherichia coli [TaxId:562] [51575] (16 PDB entries)
1. Domains for 1dhp:
  1. Domain d1dhpa_: 1dhp A: [29097]
    complexed with k
  2. Domain d1dhpb_: 1dhp B: [29098]
    complexed with k
2. Domains for 1s5t:
  1. Domain d1s5ta_: 1s5t A: [98571]
    mutant
  2. Domain d1s5tb_: 1s5t B: [98572]
    mutant
3. Domains for 1s5v:
  1. Domain d1s5va_: 1s5v A: [98581]
    mutant
  2. Domain d1s5vb_: 1s5v B: [98582]
    mutant
4. Domains for 1s5w:
  1. Domain d1s5wa_: 1s5w A: [98583]
    mutant
  2. Domain d1s5wb_: 1s5w B: [98584]
    mutant
5. Domains for 1yxc:
  1. Domain d1yxca_: 1yxc A: [124183]
    automated match to d1dhpa_
    complexed with cl, k
  2. Domain d1yxcb_: 1yxc B: [124184]
    automated match to d1dhpa_
    complexed with cl, k
6. Domains for 1yxd:
  1. Domain d1yxda_: 1yxd A: [124185]
    automated match to d1dhpa_
    complexed with cl, k, lys
  2. Domain d1yxdb_: 1yxd B: [124186]
    automated match to d1dhpa_
    complexed with cl, k, lys
7. Domains for 2a6l:
  1. Domain d2a6la1: 2a6l A:1-292 [126285]
    complexed with k; mutant
  2. Domain d2a6lb_: 2a6l B: [126286]
    automated match to d1dhpa_
    complexed with k; mutant
8. Domains for 2a6n:
  1. Domain d2a6na1: 2a6n A:1-292 [126289]
    complexed with k; mutant
  2. Domain d2a6nb_: 2a6n B: [126290]
    automated match to d1dhpa_
    complexed with k; mutant
9. Domains for 2ats:
  1. Domain d2atsa_: 2ats A: [127306]
    automated match to d1dhpa_
    complexed with cl, dly, k
  2. Domain d2atsb_: 2ats B: [127307]
    automated match to d1dhpa_
    complexed with cl, dly, k
10. Domains for 2ojp:
  1. Domain d2ojpa_: 2ojp A: [166718]
    automated match to d1dhpa_
    complexed with gol; mutant
  2. Domain d2ojpb_: 2ojp B: [166719]
    automated match to d1dhpa_
    complexed with gol; mutant
11. Domains for 2pur:
  1. Domain d2pura_: 2pur A: [167275]
    automated match to d1dhpa_
    complexed with gol, k, po4; mutant
  2. Domain d2purb_: 2pur B: [167276]
    automated match to d1dhpa_
    complexed with gol, k, po4; mutant
12. Domains for 3c0j:
  1. Domain d3c0ja_: 3c0j A: [172973]
    automated match to d1dhpa_
    complexed with gol, k, po4
  2. Domain d3c0jb_: 3c0j B: [172974]
    automated match to d1dhpa_
    complexed with gol, k, po4
13. Domains for 3du0:
  1. Domain d3du0a_: 3du0 A: [174226]
    automated match to d1dhpa_
    complexed with cl, gol, k
  2. Domain d3du0b_: 3du0 B: [174227]
    automated match to d1dhpa_
    complexed with cl, gol, k
14. Domains for 3i7q:
  1. Domain d3i7qa_: 3i7q A: [178133]
    automated match to d1dhpa_
    complexed with gol, k, po4; mutant
  2. Domain d3i7qb_: 3i7q B: [178134]
    automated match to d1dhpa_
    complexed with gol, k, po4; mutant
15. Domains for 3ubs:
  1. Domain d3ubsa_: 3ubs A: [306648]
    automated match to d4eoua_
    complexed with gol, k
  2. Domain d3ubsb_: 3ubs B: [306649]
    automated match to d4eoua_
    complexed with gol, k
16. Domains for 4eou:
  1. Domain d4eoua_: 4eou A: [192395]
    complexed with gol, k
  2. Domain d4eoub_: 4eou B: [192396]
    complexed with gol, k
Escherichia coli [TaxId:585034] [323806] (2 PDB entries)
1. Domains for 5t25:
  1. Domain d5t25a1: 5t25 A:1-292 [330476]
    Other proteins in same PDB: d5t25a2
    automated match to d3du0a_
    complexed with lys, na
  2. Domain d5t25b_: 5t25 B: [330478]
    Other proteins in same PDB: d5t25a2
    automated match to d3du0a_
    complexed with lys, na
2. Domains for 5t26:
  1. Domain d5t26a1: 5t26 A:1-292 [323869]
    Other proteins in same PDB: d5t26a2, d5t26b2
    automated match to d2atsa_
    complexed with gol, na, tla
  2. Domain d5t26b1: 5t26 B:1-292 [323807]
    Other proteins in same PDB: d5t26a2, d5t26b2
    automated match to d2atsa_
    complexed with gol, na, tla
Methanocaldococcus jannaschii [TaxId:243232] [188258] (1 PDB entry)
- Domains for 2yxg:
  1. Domain d2yxga_: 2yxg A: [170909]
    automated match to d1o5ka_
  2. Domain d2yxgb_: 2yxg B: [170910]
    automated match to d1o5ka_
  3. Domain d2yxgc_: 2yxg C: [170911]
    automated match to d1o5ka_
  4. Domain d2yxgd_: 2yxg D: [170912]
    automated match to d1o5ka_
Mycobacterium tuberculosis [TaxId:1773] [141831] (1 PDB entry)
Uniprot P63945 5-300
- Domains for 1xxx:
  1. Domain d1xxxa1: 1xxx A:5-300 [122433]
    complexed with cl, dtt, mg
  2. Domain d1xxxb_: 1xxx B: [122434]
    automated match to d1o5ka_
    complexed with cl, dtt, mg
  3. Domain d1xxxc_: 1xxx C: [122435]
    automated match to d1o5ka_
    complexed with cl, dtt, mg
  4. Domain d1xxxd_: 1xxx D: [122436]
    automated match to d1o5ka_
    complexed with cl, dtt, mg
  5. Domain d1xxxe_: 1xxx E: [122437]
    automated match to d1o5ka_
    complexed with cl, dtt, mg
  6. Domain d1xxxf_: 1xxx F: [122438]
    automated match to d1o5ka_
    complexed with cl, dtt, mg
  7. Domain d1xxxg_: 1xxx G: [122439]
    automated match to d1o5ka_
    complexed with cl, dtt, mg
  8. Domain d1xxxh_: 1xxx H: [122440]
    automated match to d1o5ka_
    complexed with cl, dtt, mg
Pseudomonas aeruginosa [TaxId:287] [189992] (1 PDB entry)
- Domains for 3s8h:
  1. Domain d3s8ha_: 3s8h A: [185311]
    automated match to d1dhpa_
    complexed with 3oh
  2. Domain d3s8hb_: 3s8h B: [185312]
    automated match to d1dhpa_
    complexed with 3oh
Pseudomonas aeruginosa, PA01 [TaxId:208964] [189575] (2 PDB entries)
1. Domains for 3ps7:
  1. Domain d3ps7a_: 3ps7 A: [183949]
    automated match to d1dhpa_
    complexed with pgo
  2. Domain d3ps7b_: 3ps7 B: [183950]
    automated match to d1dhpa_
    complexed with pgo
2. Domains for 3puo:
  1. Domain d3puoa_: 3puo A: [183980]
    automated match to d1dhpa_
    complexed with gol, lys
  2. Domain d3puob_: 3puo B: [183981]
    automated match to d1dhpa_
    complexed with gol, lys
Thermotoga maritima [TaxId:2336] [102090] (1 PDB entry)
- Domains for 1o5k:
  1. Domain d1o5ka1: 1o5k A:1-294 [92504]
    Other proteins in same PDB: d1o5ka2, d1o5kb2
    structural genomics
    complexed with ca
  2. Domain d1o5kb1: 1o5k B:1-294 [92505]
    Other proteins in same PDB: d1o5ka2, d1o5kb2
    structural genomics
    complexed with ca

More info for Protein Dihydrodipicolinate synthase from c.1.10.1: Class I aldolase

Timeline for Protein Dihydrodipicolinate synthase from c.1.10.1: Class I aldolase:

Protein Dihydrodipicolinate synthase from c.1.10.1: Class I aldolase first appeared (with stable ids) in SCOP 1.55
Protein Dihydrodipicolinate synthase from c.1.10.1: Class I aldolase appears in SCOPe 2.05
Protein Dihydrodipicolinate synthase from c.1.10.1: Class I aldolase appears in SCOPe 2.07
Protein Dihydrodipicolinate synthase from c.1.10.1: Class I aldolase appears in the current release, SCOPe 2.08