Lineage for Family c.1.8.1: Amylase, catalytic domain

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1815292Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1818156Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 1818157Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

Proteins:

  1. 18181581,4-alpha-glucan branching enzyme, central domain [82244] (1 species)
  2. 18181644-alpha-glucanotransferase [75062] (1 species)
  3. 1818170A4 beta-galactosidase [82246] (1 species)
    the catalytic domain is very similar to that of the bacterial beta-amylase; but contains a typical alpha-amylase extra domain
  4. 1818174Amylomaltase MalQ [51478] (3 species)
    4-alpha-glucanotransferase; single-domain amylase with several insertions in the common fold
    1. 1818175Species Aquifex aeolicus [TaxId:63363] [141770] (1 PDB entry)
      Uniprot O66937 1-485
    2. 1818178Species Potato (Solanum tuberosum) [TaxId:4113] [141771] (1 PDB entry)
      Uniprot Q06801 54-576
    3. 1818180Species Thermus aquaticus [TaxId:271] [51479] (4 PDB entries)
      synonym: Thermus thermophilus
  5. 1818185Amylosucrase [69384] (1 species)
  6. 1818197Animal alpha-amylase [51458] (3 species)
    contains Ca2+-binding subdomain, residues 100-170
    1. 1818198Species Human (Homo sapiens) [TaxId:9606] [51460] (49 PDB entries)
      Uniprot P04746 16-511 ! SQ 04746
    2. 1818248Species Pig (Sus scrofa) [TaxId:9823] [51459] (13 PDB entries)
    3. 1818268Species Yellow mealworm (Tenebrio molitor), larva [TaxId:7067] [51461] (4 PDB entries)
  7. 1818273Bacterial alpha-amylase [51447] (10 species)
    1. Species Bacillus halmapalus [TaxId:79882] [141768] (1 PDB entry)
      Uniprot P19571 38-431
    2. 1818276Species Bacillus licheniformis [TaxId:1402] [51448] (4 PDB entries)
    3. 1818281Species Bacillus sp. 707 [TaxId:1416] [117366] (4 PDB entries)
      Uniprot P19571 38-518
    4. 1818286Species Bacillus sp., ksm-k38 [TaxId:1409] [89463] (6 PDB entries)
    5. 1818293Species Bacillus stearothermophilus [TaxId:1422] [51451] (1 PDB entry)
    6. 1818295Species Bacillus subtilis [TaxId:1423] [51450] (2 PDB entries)
      Uniprot P00691
    7. 1818298Species Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId:1390] [63903] (4 PDB entries)
      the N-terminal 300 residues are from B. amyloliquefaciens
    8. 1818303Species Halothermothrix orenii [TaxId:31909] [141767] (1 PDB entry)
      Uniprot Q8GPL8 28-436
    9. 1818305Species Pseudoalteromonas haloplanktis [TaxId:228] [51449] (9 PDB entries)
    10. 1818315Species Pyrococcus woesei [TaxId:2262] [89464] (3 PDB entries)
  8. 1818319Bacterial beta-amylase [51485] (1 species)
    protein contains additional starch-binding domain
  9. 1818350beta-Amylase [51481] (3 species)
    Common fold covers whole protein structure
    1. 1818351Species Barley (Hordeum vulgare) [TaxId:4513] [51483] (1 PDB entry)
    2. 1818353Species Soybean (Glycine max) [TaxId:3847] [51482] (18 PDB entries)
      Uniprot P10538
    3. 1818378Species Sweet potato (Ipomoea batatas) [TaxId:4120] [51484] (1 PDB entry)
  10. 1818380Cyclodextrin glycosyltransferase [51452] (5 species)
    contains two more all-beta domains, one is Immunoglobulin-like and the other is trasthyretin-like
    1. 1818381Species Bacillus circulans, different strains [TaxId:1397] [51453] (36 PDB entries)
    2. 1818422Species Bacillus sp. 1011, alkaliphilic [TaxId:1410] [51456] (8 PDB entries)
      Uniprot P05618
    3. 1818439Species Bacillus stearothermophilus [TaxId:1422] [51454] (1 PDB entry)
    4. 1818441Species Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId:1422] [51455] (2 PDB entries)
    5. 1818444Species Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId:33950] [51457] (4 PDB entries)
  11. 1818449Cyclomaltodextrinase, central domain [102058] (1 species)
    protein shares similar domain organization with maltogenic amylases but differs in the spatial arrangement of its domains
  12. 1818453Fungal alpha-amylases [51462] (2 species)
    1. 1818454Species Aspergillus niger, acid amylase [TaxId:5061] [51463] (1 PDB entry)
    2. 1818456Species Aspergillus oryzae, Taka-amylase [TaxId:5062] [51464] (8 PDB entries)
  13. 1818468G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) [51472] (1 species)
  14. 1818479Glycosyltrehalose trehalohydrolase, central domain [51468] (2 species)
    contains an additional N-terminal domain
    1. 1818480Species Deinococcus radiodurans [TaxId:1299] [141769] (9 PDB entries)
      Uniprot Q9RX51 111-528
    2. 1818490Species Sulfolobus solfataricus, km1 [TaxId:2287] [51469] (8 PDB entries)
  15. 1818499Isoamylase, central domain [51470] (1 species)
  16. 1818502Isomaltulose synthase PalI [89466] (2 species)
    1. 1818503Species Erwinia rhapontici [TaxId:55212] [254869] (5 PDB entries)
    2. 1818509Species Klebsiella sp., lx3 [TaxId:576] [89467] (1 PDB entry)
  17. 1818511Maltogenic amylase, central domain [51465] (4 species)
    contains an additional N-terminal domain
    1. 1818512Species Bacillus sp., cyclomaltodextrinase [TaxId:1409] [75060] (1 PDB entry)
    2. 1818515Species Thermoactinomyces vulgaris, TVAI [TaxId:2026] [75061] (8 PDB entries)
    3. Species Thermoactinomyces vulgaris, TVAII [TaxId:2026] [51467] (11 PDB entries)
    4. 1818548Species Thermus sp. [TaxId:275] [51466] (2 PDB entries)
  18. 1818553Maltooligosyl trehalose synthase [82242] (1 species)
    elaborated with several large insertions in the common fold
  19. 1818556Maltosyltransferase [63904] (1 species)
    similar to bacterial alpha-amylase; contains larger insertion domain
  20. 1818560Melibiase [75064] (4 species)
    1. 1818561Species Chicken (Gallus gallus) [TaxId:9031] [75065] (2 PDB entries)
      alpha-N-acetylgalactosaminidase
    2. 1818564Species Human (Homo sapiens) [TaxId:9606] [102062] (17 PDB entries)
      alpha-galactosidase A
    3. 1818599Species Rice (Oryza sativa) [TaxId:4530] [89468] (1 PDB entry)
      alpha-galactosidase
    4. 1818601Species Trichoderma reesei [TaxId:51453] [110349] (2 PDB entries)
      Alpha-galactosidase agl1
      Uniprot Q92456
  21. 1818604Neopullulanase, central domain [82240] (1 species)
    homologous to Maltogenic amylase
  22. 1818614Oligo-1,6, glucosidase [51476] (1 species)
  23. 1818617Plant alpha-amylase [51474] (2 species)
    1. 1818618Species Barley (Hordeum vulgare), AMY1 isozyme [TaxId:4513] [89465] (7 PDB entries)
    2. 1818628Species Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId:4513] [51475] (3 PDB entries)
  24. 1818633Pullulanase PulA [159381] (1 species)
  25. 1818641Sucrose phosphorylase [102060] (1 species)
    sequence and close structural relationship to amylosucrase; variations in the C-terminal domain fold
  26. 1818647automated matches [190099] (22 species)
    not a true protein
    1. 1818648Species Arabidopsis thaliana [TaxId:3702] [278910] (6 PDB entries)
    2. Species Bacillus cereus [TaxId:1396] [254917] (3 PDB entries)
    3. 1818665Species Bacillus halmapalus [TaxId:79882] [255187] (2 PDB entries)
    4. 1818668Species Bacillus sp. [225222] (1 PDB entry)
    5. 1818670Species Bacillus sp. [TaxId:535911] [225472] (1 PDB entry)
    6. 1818672Species Bacillus subtilis [TaxId:224308] [228099] (4 PDB entries)
    7. 1818678Species Barley (Hordeum vulgare) [TaxId:4513] [255684] (8 PDB entries)
    8. 1818687Species Bifidobacterium adolescentis [TaxId:1680] [255183] (1 PDB entry)
    9. 1818690Species Escherichia coli [TaxId:562] [270950] (2 PDB entries)
    10. 1818699Species Flavobacterium sp. [TaxId:197856] [255816] (5 PDB entries)
    11. 1818710Species Human (Homo sapiens) [TaxId:9606] [225770] (13 PDB entries)
    12. 1818732Species Listeria monocytogenes [TaxId:169963] [277525] (1 PDB entry)
    13. 1818736Species Neisseria polysaccharea [TaxId:489] [226280] (5 PDB entries)
    14. 1818742Species Oryzias latipes [TaxId:8090] [226401] (1 PDB entry)
    15. 1818744Species Pig (Sus scrofa) [TaxId:9823] [225875] (3 PDB entries)
    16. 1818748Species Protaminobacter rubrum [TaxId:126825] [225680] (2 PDB entries)
    17. 1818751Species Pseudomonas mesoacidophila [TaxId:265293] [224875] (9 PDB entries)
    18. 1818772Species Pyrococcus woesei [TaxId:2262] [226292] (1 PDB entry)
    19. 1818774Species Soybean (Glycine max) [TaxId:3847] [186821] (2 PDB entries)
    20. 1818777Species Thermoactinomyces vulgaris [TaxId:2026] [254920] (6 PDB entries)
    21. 1818789Species Thermus brockianus [TaxId:56956] [189542] (1 PDB entry)
    22. 1818791Species Thermus thermophilus [TaxId:274] [188525] (3 PDB entries)

More info for Family c.1.8.1: Amylase, catalytic domain

Timeline for Family c.1.8.1: Amylase, catalytic domain: