SCOPe 2.05: Protein: Eukaryotic ornithine decarboxylase

Lineage for Protein: Eukaryotic ornithine decarboxylase

Root: SCOPe 2.05
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (3 proteins)
Protein Eukaryotic ornithine decarboxylase [51423] (3 species)

Species:

Human (Homo sapiens) [TaxId:9606] [51424] (1 PDB entry)
- Domains for 1d7k:
  1. Domain d1d7ka2: 1d7k A:44-283 [28648]
    Other proteins in same PDB: d1d7ka1, d1d7kb1
  2. Domain d1d7kb2: 1d7k B:44-283 [28649]
    Other proteins in same PDB: d1d7ka1, d1d7kb1
Mouse (Mus musculus) [TaxId:10090] [51425] (1 PDB entry)
- Domain for 7odc:
  - Domain d7odca2: 7odc A:44-283 [28650]
    Other proteins in same PDB: d7odca1
    complexed with plp
Trypanosome (Trypanosoma brucei) [TaxId:5691] [51426] (5 PDB entries)
Uniprot P07805
1. Domains for 1f3t:
  1. Domain d1f3ta2: 1f3t A:44-283 [28655]
    Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
    complexed with plp, put
  2. Domain d1f3tb2: 1f3t B:44-283 [28656]
    Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
    complexed with plp, put
  3. Domain d1f3tc2: 1f3t C:44-283 [28657]
    Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
    complexed with plp, put
  4. Domain d1f3td2: 1f3t D:44-283 [28658]
    Other proteins in same PDB: d1f3ta1, d1f3tb1, d1f3tc1, d1f3td1
    complexed with plp, put
2. Domains for 1njj:
  1. Domain d1njja2: 1njj A:44-283 [91906]
    Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
    complexed with get, orx
  2. Domain d1njjb2: 1njj B:44-283 [91908]
    Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
    complexed with get, orx
  3. Domain d1njjc2: 1njj C:44-283 [91910]
    Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
    complexed with get, orx
  4. Domain d1njjd2: 1njj D:44-283 [91912]
    Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
    complexed with get, orx
3. Domains for 1qu4:
  1. Domain d1qu4a2: 1qu4 A:44-283 [28659]
    Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
    complexed with plp
  2. Domain d1qu4b2: 1qu4 B:44-283 [28660]
    Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
    complexed with plp
  3. Domain d1qu4c2: 1qu4 C:44-283 [28661]
    Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
    complexed with plp
  4. Domain d1qu4d2: 1qu4 D:44-283 [28662]
    Other proteins in same PDB: d1qu4a1, d1qu4b1, d1qu4c1, d1qu4d1
    complexed with plp
4. Domains for 1szr:
  1. Domain d1szra2: 1szr A:44-283 [112175]
    Other proteins in same PDB: d1szra1, d1szrb1, d1szrc1, d1szrd1
    complexed with orx, plg, pxp; mutant
  2. Domain d1szrb2: 1szr B:44-283 [112177]
    Other proteins in same PDB: d1szra1, d1szrb1, d1szrc1, d1szrd1
    complexed with orx, plg, pxp; mutant
  3. Domain d1szrc2: 1szr C:44-283 [112179]
    Other proteins in same PDB: d1szra1, d1szrb1, d1szrc1, d1szrd1
    complexed with orx, plg, pxp; mutant
  4. Domain d1szrd2: 1szr D:44-283 [112181]
    Other proteins in same PDB: d1szra1, d1szrb1, d1szrc1, d1szrd1
    complexed with orx, plg, pxp; mutant
5. Domains for 2tod:
  1. Domain d2toda2: 2tod A:44-283 [28651]
    Other proteins in same PDB: d2toda1, d2todb1, d2todc1, d2todd1
    complexed with dmo, plp; mutant
  2. Domain d2todb2: 2tod B:44-283 [28652]
    Other proteins in same PDB: d2toda1, d2todb1, d2todc1, d2todd1
    complexed with dmo, plp; mutant
  3. Domain d2todc2: 2tod C:44-283 [28653]
    Other proteins in same PDB: d2toda1, d2todb1, d2todc1, d2todd1
    complexed with dmo, plp; mutant
  4. Domain d2todd2: 2tod D:44-283 [28654]
    Other proteins in same PDB: d2toda1, d2todb1, d2todc1, d2todd1
    complexed with dmo, plp; mutant

More info for Protein Eukaryotic ornithine decarboxylase from c.1.6.1: Alanine racemase-like, N-terminal domain

Timeline for Protein Eukaryotic ornithine decarboxylase from c.1.6.1: Alanine racemase-like, N-terminal domain:

Protein Eukaryotic ornithine decarboxylase from c.1.6.1: Alanine racemase-like, N-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein Eukaryotic ornithine decarboxylase from c.1.6.1: Alanine racemase-like, N-terminal domain appears in SCOPe 2.04
Protein Eukaryotic ornithine decarboxylase from c.1.6.1: Alanine racemase-like, N-terminal domain appears in SCOPe 2.06
Protein Eukaryotic ornithine decarboxylase from c.1.6.1: Alanine racemase-like, N-terminal domain appears in the current release, SCOPe 2.08