SCOP 1.65: Family c.1.6.1: Alanine racemase-like, N-terminal domain

Lineage for Family c.1.6.1: Alanine racemase-like, N-terminal domain

1. Root: SCOP 1.65

2. Class c: Alpha and beta proteins (a/b) [51349] (121 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (26 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
   circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand

5. Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (3 proteins)

Proteins:

1. Alanine racemase [51421] (1 species)

   • Species Bacillus stearothermophilus [TaxId:1422] [51422] (7 PDB entries)

2. Diaminopimelate decarboxylase LysA [89457] (1 species)
   most similar to eukaryotic ODC

   • Species Mycobacterium tuberculosis [TaxId:1773] [89458] (2 PDB entries)

3. Eukaryotic ornithine decarboxylase [51423] (3 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [51424] (1 PDB entry)

   2. Species Mouse (Mus musculus) [TaxId:10090] [51425] (1 PDB entry)

   3. Species Trypanosoma brucei [TaxId:5691] [51426] (3 PDB entries)

More info for Family c.1.6.1: Alanine racemase-like, N-terminal domain

Timeline for Family c.1.6.1: Alanine racemase-like, N-terminal domain:

• Family c.1.6.1: Alanine racemase-like, N-terminal domain first appeared (with stable ids) in SCOP 1.55
  
• Family c.1.6.1: Alanine racemase-like, N-terminal domain appears in SCOP 1.63
  
• Family c.1.6.1: Alanine racemase-like, N-terminal domain appears in SCOP 1.67
  
• Family c.1.6.1: Alanine racemase-like, N-terminal domain appears in the current release, SCOPe 2.08