Lineage for Family c.1.4.1: FMN-linked oxidoreductases

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 968086Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 969026Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families) (S)
  5. 969027Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins)

Proteins:

  1. 969028(S)-3-O-geranylgeranylglyceryl phosphate synthase [141765] (1 species)
  2. 96903412-oxophytodienoate reductase (OPR, OYE homolog) [63896] (3 species)
    1. 969035Species Thale cress (Arabidopsis thaliana), OPR1 [TaxId:3702] [102040] (1 PDB entry)
      At1G76680
    2. 969037Species Thale cress (Arabidopsis thaliana), OPR3 [TaxId:3702] [102041] (2 PDB entries)
    3. 969042Species Tomato (Lycopersicon esculentum), OPR1 [TaxId:4081] [63897] (4 PDB entries)
  3. 9690512,4-dienoyl-CoA reductase, N-terminal domain [102042] (1 species)
  4. 969054Alpha subunit of glutamate synthase, central and FMN domains [69381] (2 species)
    Central domain (residues 423-780) may be a rudiment form of the FMN domain
    1. 969055Species Azospirillum brasilense [TaxId:192] [69382] (2 PDB entries)
    2. 969064Species Synechocystis sp. [TaxId:1143] [75055] (5 PDB entries)
  5. 969072Dihydroorotate dehydrogenase [51397] (7 species)
    1. 969073Species Escherichia coli [TaxId:562] [82239] (1 PDB entry)
    2. 969078Species Human (Homo sapiens) [TaxId:9606] [51400] (11 PDB entries)
    3. 969090Species Lactococcus lactis, isozyme A [TaxId:1358] [51398] (9 PDB entries)
    4. 969109Species Lactococcus lactis, isozyme B [TaxId:1358] [51399] (3 PDB entries)
      PyrD subunit
    5. 969113Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [141759] (1 PDB entry)
      Uniprot Q08210 158-566
      homolog, mitochonrial
    6. 969115Species Norway rat (Rattus norvegicus) [TaxId:10116] [102039] (2 PDB entries)
    7. 969119Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [141758] (1 PDB entry)
      Uniprot Q57U83 2-313
  6. 969121Dihydropyrimidine dehydrogenase, domain 4 [51410] (1 species)
  7. 969143Flavocytochrome b2, C-terminal domain [51408] (1 species)
  8. 969166Glycolate oxidase [51404] (1 species)
  9. 969173Hydroxyacid oxidase [141761] (1 species)
  10. 969176Isopentenyl-diphosphate delta-isomerase [89454] (3 species)
    1. 969177Species Bacillus subtilis [TaxId:1423] [89455] (2 PDB entries)
    2. 969182Species Thermus thermophilus HB8 [TaxId:300852] [159377] (1 PDB entry)
    3. 969187Species Thermus thermophilus [TaxId:274] [141760] (2 PDB entries)
      Uniprot Q53W52 23-332
  11. 969194Membrane-associated (S)-mandelate dehydrogenase [63898] (1 species)
  12. 969199Morphinone reductase [75053] (1 species)
  13. 969204NADPH dehydrogenase NamA [141763] (1 species)
    OYE homolog
  14. 969214Old yellow enzyme (OYE) [51401] (2 species)
    1. 969215Species Lager yeast (Saccharomyces pastorianus) [TaxId:27292] [51402] (7 PDB entries)
    2. 969223Species Yeast (Candida albicans) [TaxId:5476] [51403] (2 PDB entries)
  15. 969226PcrB protein homolog YerE [102046] (1 species)
    provisional classification; it is not known whether this protein binds FMN or not
  16. 969230Pentaerythritol tetranirate reductase [63900] (1 species)
  17. 969260Putative flavin oxidoreducatase TM0096 [102044] (1 species)
    Dihydrouridine synthase (Dus) homologue; contains extra C-terminal alpha-helical domain
  18. 969263Trimethylamine dehydrogenase, N-terminal domain [51406] (1 species)
    two other domains are alpha/beta Rossmann-like fold and beta/beta/alpha fold
  19. 969275automated matches [190228] (7 species)
    not a true protein
    1. 969276Species Human (Homo sapiens) [TaxId:9606] [187000] (6 PDB entries)
    2. 969283Species Lactococcus lactis [TaxId:1358] [186992] (2 PDB entries)
    3. 969288Species Leishmania donovani [TaxId:5661] [188354] (1 PDB entry)
    4. 969293Species Plasmodium falciparum [TaxId:36329] [189697] (1 PDB entry)
    5. 969295Species Solanum lycopersicum [TaxId:4081] [187823] (5 PDB entries)
    6. 969306Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [187180] (2 PDB entries)
    7. 969310Species Trypanosoma cruzi [TaxId:5693] [187324] (7 PDB entries)

More info for Family c.1.4.1: FMN-linked oxidoreductases

Timeline for Family c.1.4.1: FMN-linked oxidoreductases: