SCOPe 2.08: Protein: Type III antifreeze protein, AFP III

Lineage for Protein: Type III antifreeze protein, AFP III

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.85: beta-clip [51268] (7 superfamilies)
double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
Superfamily b.85.1: AFP III-like domain [51269] (2 families)
duplication: consists of two structural repeats related by pseudo dyad
Family b.85.1.1: AFP III-like domain [51270] (4 proteins)
Pfam PF01354
Protein Type III antifreeze protein, AFP III [51271] (3 species)

Species:

Antarctic eel pout (Austrolycichthys brachycephalus) and (Lycodichthys dearborni), RD3 isoform [TaxId:36221] [51273] (4 PDB entries)
duplication: intramolecular dimer
1. Domains for 1c89:
  1. Domain d1c89a1: 1c89 A:1-68 [28314]
  2. Domain d1c89a2: 1c89 A:69-134 [28315]
2. Domains for 1c8a:
  1. Domain d1c8aa1: 1c8a A:1-68 [28312]
  2. Domain d1c8aa2: 1c8a A:69-134 [28313]
3. Domain for 3nla:
  - Domain d3nlaa_: 3nla A: [28316]
    N-Terminal domain with a linker portion
4. Domain for 3rdn:
  - Domain d3rdna_: 3rdn A: [28311]
    N-Terminal domain with a linker portion
Antarctic eel pout (Lycodichthys dearborni), RD1 isoform [TaxId:8201] [89424] (1 PDB entry)
- Domain for 1ucs:
  - Domain d1ucsa_: 1ucs A: [88466]
Ocean pout (Macrozoarces americanus), different isoforms [TaxId:8199] [51272] (31 PDB entries)
1. Domain for 1ame:
  - Domain d1amea_: 1ame A: [28285]
2. Domain for 1b7i:
  - Domain d1b7ia_: 1b7i A: [28288]
3. Domain for 1b7j:
  - Domain d1b7ja_: 1b7j A: [28283]
4. Domain for 1b7k:
  - Domain d1b7ka_: 1b7k A: [28306]
5. Domain for 1ekl:
  - Domain d1ekla_: 1ekl A: [28289]
6. Domain for 1gzi:
  - Domain d1gzia_: 1gzi A: [28295]
7. Domain for 1hg7:
  - Domain d1hg7a1: 1hg7 A:1001-1065 [28280]
    Other proteins in same PDB: d1hg7a2
    complexed with so4
8. Domain for 1jab:
  - Domain d1jaba_: 1jab A: [28284]
9. Domain for 1kde:
  - Domain d1kdea_: 1kde A: [28310]
    mutant
10. Domain for 1kdf:
  - Domain d1kdfa_: 1kdf A: [28309]
    mutant
11. Domain for 1msi:
  - Domain d1msia_: 1msi A: [28281]
12. Domain for 1msj:
  - Domain d1msja_: 1msj A: [28305]
13. Domain for 1ops:
  - Domain d1opsa_: 1ops A: [28302]
14. Domain for 2ame:
  - Domain d2amea_: 2ame A: [28300]
15. Domain for 2jia:
  - Domain d2jiaa_: 2jia A: [28286]
16. Domain for 2msi:
  - Domain d2msia_: 2msi A: [28297]
17. Domain for 2msj:
  - Domain d2msja_: 2msj A: [28303]
18. Domain for 2spg:
  - Domain d2spga_: 2spg A: [28291]
19. Domain for 3ame:
  - Domain d3amea_: 3ame A: [28304]
20. Domain for 3msi:
  - Domain d3msia_: 3msi A: [28282]
21. Domain for 4ame:
  - Domain d4amea_: 4ame A: [28298]
22. Domain for 4msi:
  - Domain d4msia_: 4msi A: [28292]
23. Domain for 5msi:
  - Domain d5msia_: 5msi A: [28293]
24. Domain for 6ame:
  - Domain d6amea_: 6ame A: [28299]
25. Domain for 6msi:
  - Domain d6msia_: 6msi A: [28296]
26. Domain for 7ame:
  - Domain d7amea_: 7ame A: [28287]
27. Domain for 7msi:
  - Domain d7msia_: 7msi A: [28290]
28. Domain for 8ame:
  - Domain d8amea_: 8ame A: [28301]
29. Domain for 8msi:
  - Domain d8msia_: 8msi A: [28308]
30. Domain for 9ame:
  - Domain d9amea_: 9ame A: [28294]
31. Domain for 9msi:
  - Domain d9msia_: 9msi A: [28307]

More info for Protein Type III antifreeze protein, AFP III from b.85.1.1: AFP III-like domain

Timeline for Protein Type III antifreeze protein, AFP III from b.85.1.1: AFP III-like domain:

Protein Type III antifreeze protein, AFP III from b.85.1.1: AFP III-like domain first appeared (with stable ids) in SCOP 1.55, called Protein Type III antifreeze protein from b.85.1.1: Type III antifreeze protein
Protein Type III antifreeze protein, AFP III from b.85.1.1: AFP III-like domain appears in SCOPe 2.07