SCOPe 2.05: Superfamily b.82.2: Clavaminate synthase-like

Lineage for Superfamily b.82.2: Clavaminate synthase-like

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology

4. Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families)
   Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold

Families:

1. b.82.2.1: Penicillin synthase-like [51198] (5 proteins)
   common fold is rather distorted

2. b.82.2.2: Clavaminate synthase [51203] (1 protein)

3. b.82.2.3: Gab protein (hypothetical protein YgaT) [63855] (2 proteins)
   automatically mapped to Pfam PF08943

4. b.82.2.4: Type II Proline 3-hydroxylase (proline oxidase) [63858] (1 protein)

5. b.82.2.5: TauD/TfdA-like [75038] (3 proteins)
   automatically mapped to Pfam PF02668

6. b.82.2.6: Hypoxia-inducible factor HIF ihhibitor (FIH1) [82194] (1 protein)

7. b.82.2.7: YhcH-like [89413] (1 protein)
   automatically mapped to Pfam PF04074

8. b.82.2.8: gamma-Butyrobetaine hydroxylase [89416] (3 proteins)
   Pfam PF03322

9. b.82.2.9: PhyH-like [141623] (3 proteins)
   Pfam PF05721

10. b.82.2.10: AlkB-like [141628] (3 proteins)
    automatically mapped to Pfam PF13532

11. b.82.2.11: Asparaginyl hydroxylase-like [141633] (1 protein)
    Pfam PF08007

12. b.82.2.12: YbiU-like [141636] (2 proteins)
    Pfam PF07350; DUF1479

13. b.82.2.13: TehB-like [159307] (2 proteins)
    Pfam PF09313; DUF1971

14. b.82.2.14: Histone demethylase core [254153] (4 proteins)
    Jumonji domain; Pfam PF02375 (JmjN) and Pfam PF02373 (JmjC); relationship to FIH1 (b.82.2.6) described in PubMed 16983801

15. b.82.2.15: proly-4-hydroxylase (P4H, PHD) like [254173] (3 proteins)
    Pfam PF13640; PubMed 16782814

16. b.82.2.0: automated matches [191672] (1 protein)
    not a true family

More info for Superfamily b.82.2: Clavaminate synthase-like

Timeline for Superfamily b.82.2: Clavaminate synthase-like:

• Superfamily b.82.2: Clavaminate synthase-like first appeared (with stable ids) in SCOP 1.55
  
• Superfamily b.82.2: Clavaminate synthase-like appears in SCOPe 2.04
  
• Superfamily b.82.2: Clavaminate synthase-like appears in SCOPe 2.06
  
• Superfamily b.82.2: Clavaminate synthase-like appears in the current release, SCOPe 2.08